Slurm output of step 8

CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
To initialize your shell, run

    $ conda init <SHELL_NAME>

Currently supported shells are:
  - bash
  - fish
  - tcsh
  - xonsh
  - zsh
  - powershell

See 'conda init --help' for more information and options.

IMPORTANT: You may need to close and restart your shell after running 'conda init'.


Running EcoTyper...
Skipping step 1 (extract cell type specific genes)...
Skipping step 2 (cell state discovery on correrlation matrices)...
Skipping step 3 (choosing the number of cell states)...

Skipping step 4 (extracting cell state information)...
Skipping step 5 (cell state re-discovery in expression matrices)...

Skipping step 6 (extracting information for re-discovered cell states)...

Skipping step 7 (cell state QC filter)...

Step 8 (ecotype discovery)...
Step 8 (ecotype discovery) finished successfully!
INFO [2022-08-08 15:47:31] ----------------------------------------------------------
INFO [2022-08-08 15:47:31] Assembling data from:  Cholangiocytes
INFO [2022-08-08 15:47:34] mapping was read with shape:  2, 2
INFO [2022-08-08 15:47:34] H was read with shape:  3, 6
INFO [2022-08-08 15:47:34] H has these row.names:  IS01, IS02, IS03
INFO [2022-08-08 15:47:34] initial states are:  IS01, IS03
INFO [2022-08-08 15:47:34] matching states and row.names as:  1, 3
INFO [2022-08-08 15:47:34] this are the InitialState and State within mapping: 
  InitialState State
1         IS01   S01
2         IS03   S02
INFO [2022-08-08 15:47:34] (after matching) H has these row.names:  S01, S02
INFO [2022-08-08 15:47:34] (pre assembly) Assembling all_H, which has shape:  
INFO [2022-08-08 15:47:34] (after assembly) Assembling all_H, which has shape:  2, 5  and names:  Cholangiocytes_S01, Cholangiocytes_S02
INFO [2022-08-08 15:47:34] ----------------------------------------------------------
INFO [2022-08-08 15:47:34] Assembling data from:  Endothelial_cell
INFO [2022-08-08 15:47:36] mapping was read with shape:  6, 2
INFO [2022-08-08 15:47:36] H was read with shape:  8, 17
INFO [2022-08-08 15:47:36] H has these row.names:  IS01, IS02, IS03, IS04, IS05, IS06, IS07, IS08
INFO [2022-08-08 15:47:36] initial states are:  IS04, IS06, IS07, IS02, IS01, IS08
INFO [2022-08-08 15:47:36] matching states and row.names as:  4, 6, 7, 2, 1, 8
INFO [2022-08-08 15:47:36] this are the InitialState and State within mapping: 
  InitialState State
1         IS04   S01
2         IS06   S02
3         IS07   S03
4         IS02   S04
5         IS01   S05
6         IS08   S06
INFO [2022-08-08 15:47:36] (after matching) H has these row.names:  S01, S02, S03, S04, S05, S06
INFO [2022-08-08 15:47:36] (pre assembly) Assembling all_H, which has shape:  2, 5
INFO [2022-08-08 15:47:36] (after assembly) Assembling all_H, which has shape:  8, 16  and names:  Cholangiocytes_S01, Cholangiocytes_S02, Endothelial_cell_S01, Endothelial_cell_S02, Endothelial_cell_S03, Endothelial_cell_S04, Endothelial_cell_S05, Endothelial_cell_S06
INFO [2022-08-08 15:47:36] ----------------------------------------------------------
INFO [2022-08-08 15:47:36] Assembling data from:  Hepatic_stellate_cells
INFO [2022-08-08 15:47:38] mapping was read with shape:  7, 2
INFO [2022-08-08 15:47:38] H was read with shape:  10, 17
INFO [2022-08-08 15:47:38] H has these row.names:  IS01, IS02, IS03, IS04, IS05, IS06, IS07, IS08, IS09, IS10
INFO [2022-08-08 15:47:38] initial states are:  IS03, IS08, IS04, IS09, IS02, IS06, IS07
INFO [2022-08-08 15:47:38] matching states and row.names as:  3, 8, 4, 9, 2, 6, 7
INFO [2022-08-08 15:47:38] this are the InitialState and State within mapping: 
  InitialState State
1         IS03   S01
2         IS08   S02
3         IS04   S03
4         IS09   S04
5         IS02   S05
6         IS06   S06
7         IS07   S07
INFO [2022-08-08 15:47:38] (after matching) H has these row.names:  S01, S02, S03, S04, S05, S06, S07
INFO [2022-08-08 15:47:38] (pre assembly) Assembling all_H, which has shape:  8, 16
INFO [2022-08-08 15:47:38] (after assembly) Assembling all_H, which has shape:  15, 16  and names:  Cholangiocytes_S01, Cholangiocytes_S02, Endothelial_cell_S01, Endothelial_cell_S02, Endothelial_cell_S03, Endothelial_cell_S04, Endothelial_cell_S05, Endothelial_cell_S06, Hepatic_stellate_cells_S01, Hepatic_stellate_cells_S02, Hepatic_stellate_cells_S03, Hepatic_stellate_cells_S04, Hepatic_stellate_cells_S05, Hepatic_stellate_cells_S06, Hepatic_stellate_cells_S07
INFO [2022-08-08 15:47:38] ----------------------------------------------------------
INFO [2022-08-08 15:47:38] Assembling data from:  Hepatoblasts
INFO [2022-08-08 15:47:40] mapping was read with shape:  3, 2
INFO [2022-08-08 15:47:40] H was read with shape:  5, 2
INFO [2022-08-08 15:47:40] H has these row.names:  IS01, IS02, IS03, IS04, IS05
INFO [2022-08-08 15:47:40] initial states are:  IS04, IS01, IS05
INFO [2022-08-08 15:47:40] matching states and row.names as:  NA, NA, NA
INFO [2022-08-08 15:47:40] this are the InitialState and State within mapping: 
  InitialState State
1         IS04   S01
2         IS01   S02
3         IS05   S03
Fehler in H[match(mapping$InitialState, rownames(H)), ] : 
  falsche Anzahl von Dimensionen
Ausführung angehalten
Fehler in RunJobQueue() : 
  EcoTyper failed. Please check the error message above!
Ausführung angehalten