EcoTyper single-cell wilcoxon error log

The logs of EcoTyper failing when there is only a single cell available.
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NoahHK
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2 years ago
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Running EcoTyper...

Step 1 (extract cell type specific genes)...
[1] "Cholangiocytes"
[1] "Endothelial_cell"
[1] "Hepatic_stellate_cells"
[1] "Hepatoblasts"
[1] "Hepatocytes"
[1] "Immune_system_cells"
[1] "Kupffer_cells"
[1] "Mast_cells"
[1] "Monocytes"
[1] "Unknown"
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type from the EcoTyper analysis! 
Warning message:
row_wilcoxon_twosample: 17055 of the rows had less than 1 remaining finite "x" observation.
First occurrence at row 1 
Step 1 (extract cell type specific genes) finished successfully!

Step 2 (cell state discovery on correrlation matrices): Calculating correlation matrices...
Error: Only 1 single cells are available for cell type: Cholangiocytes. At least 50 are required. Skipping this cell type!
Execution halted
Warning message:
There are more than 2500 single cells available for cell type 'Endothelial_cell'. Subsampling to 2500 cells.
 
Warning message:
There are more than 2500 single cells available for cell type 'Unknown'. Subsampling to 2500 cells.
 
Warning message:
There are more than 2500 single cells available for cell type 'Kupffer_cells'. Subsampling to 2500 cells.
 
Warning message:
There are more than 2500 single cells available for cell type 'Hepatocytes'. Subsampling to 2500 cells.
 
Filtering 'Monocytes' profiles for cell type specific genes...
Filtering 'Mast_cells' profiles for cell type specific genes...
Filtering 'Immune_system_cells' profiles for cell type specific genes...
Filtering 'Hepatoblasts' profiles for cell type specific genes...
Filtering 'Hepatocytes' profiles for cell type specific genes...
Filtering 'Hepatic_stellate_cells' profiles for cell type specific genes...
Filtering 'Unknown' profiles for cell type specific genes...
Filtering 'Kupffer_cells' profiles for cell type specific genes...
Filtering 'Endothelial_cell' profiles for cell type specific genes...
Error in RunJobQueue() : 
  EcoTyper failed. Please check the error message above!
Execution halted