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nextflow run nf-core/sarek \
    -profile negishi \
    --genome 'b73_chr1_150000001-151000000' \
    --tools strelka,freebayes,haplotypecaller,mpileup \
    --skip_tools baserecalibrator \
    --concatenate_vcfs \
    --input /scratch/negishi/aseethar/maize_sarek/maize_samplesheet.csv \
    --outdir results_maize