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7 months ago
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spaceranger count --id="mouse_A_Sham" \
                 --description="mouse kidney sham" \
                 --transcriptome=/home/spatial/refdata-gex-mm10-2020-A \
                 --probe-set=/home/spatial/Visium_Mouse_Transcriptome_Probe_Set_v1.0_mm10-2020-A.csv \
                 --fastqs=/home/spatial/cytassist/FASTQ/A_Sham \
                 --cytaimage=/home/spatial/cytassist/HE/CAVG10073_2023-11-08_11-19-32_2023-11-08_11-02-16_V53Y08-337_A_sham.tif \
                 --slide=V53Y08-337 \
                 --area=A1 \
                 --reorient-images=true \
                 --localcores=8 \
                 --localmem=128 \
	  --sample=LIB014404-DIL01_22GMHLLT3
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