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powershell
2 years ago
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spaceranger count --id="mouse_A_Sham" \ --description="mouse kidney sham" \ --transcriptome=/home/spatial/refdata-gex-mm10-2020-A \ --probe-set=/home/spatial/Visium_Mouse_Transcriptome_Probe_Set_v1.0_mm10-2020-A.csv \ --fastqs=/home/spatial/cytassist/FASTQ/A_Sham \ --cytaimage=/home/spatial/cytassist/HE/CAVG10073_2023-11-08_11-19-32_2023-11-08_11-02-16_V53Y08-337_A_sham.tif \ --slide=V53Y08-337 \ --area=A1 \ --reorient-images=true \ --localcores=8 \ --localmem=128 \ --sample=LIB014404-DIL01_22GMHLLT3
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