Untitled

 avatar
unknown
powershell
2 years ago
696 B
3
Indexable
spaceranger count --id="mouse_B_Day14" \
                 --description="mouse kidney Day14" \
                 --transcriptome=/home/spatial/refdata-gex-mm10-2020-A \
                 --probe-set=/home/spatial/Visium_Mouse_Transcriptome_Probe_Set_v1.0_mm10-2020-A.csv \
                 --fastqs=/home/spatial/cytassist/FASTQ/B_Day14 \
                 --cytaimage=/home/spatial/cytassist/HE/CAVG10073_2023-11-08_11-19-32_2023-11-08_11-02-16_V53Y08-337_B_B-day14.tif \
                 --slide=V53Y08-337 \
                 --area=B1 \
                 --reorient-images=true \
                 --localcores=8 \
                 --localmem=128 \
				 --sample=LIB014405-DIL01_22G7THLT3_22G37TLT3
Editor is loading...
Leave a Comment