Untitled
unknown
powershell
2 years ago
696 B
3
Indexable
spaceranger count --id="mouse_B_Day14" \ --description="mouse kidney Day14" \ --transcriptome=/home/spatial/refdata-gex-mm10-2020-A \ --probe-set=/home/spatial/Visium_Mouse_Transcriptome_Probe_Set_v1.0_mm10-2020-A.csv \ --fastqs=/home/spatial/cytassist/FASTQ/B_Day14 \ --cytaimage=/home/spatial/cytassist/HE/CAVG10073_2023-11-08_11-19-32_2023-11-08_11-02-16_V53Y08-337_B_B-day14.tif \ --slide=V53Y08-337 \ --area=B1 \ --reorient-images=true \ --localcores=8 \ --localmem=128 \ --sample=LIB014405-DIL01_22G7THLT3_22G37TLT3
Editor is loading...
Leave a Comment