Server script (run_gemmi.py) for minimapai.de
jbcooper
python
2 years ago
1.0 kB
4
Indexable
Never
Mini Map Aide
#!/usr/bin/python3 import cgi import os import cgitb import subprocess print("Content-type:text/html\r\n\r\n") # needed cgitb.enable() form = cgi.FieldStorage() pdbfile = form["pdbfile"] pdbname = os.path.basename(pdbfile.filename) open("/var/www/html/temp/" + pdbname, "wb").write(pdbfile.file.read()) #message = "<p>The file " + pdbname + " was uploaded successfully</p>" #print(message) mtzfile = form["mtzfile"] mtzname = os.path.basename(mtzfile.filename) open("/var/www/html/temp/" + mtzname, "wb").write(mtzfile.file.read()) #message = "<p>The file " + mtzname + " was uploaded successfully</p>" #print(message) diffneeded = form.getvalue("diffneeded") #print(diffneeded) mapname=mtzname.split(".",1)[0] if diffneeded=="true": gemmiproc=["gemmi","sf2map","-d","-s3","--mapmask=../temp/"+pdbname,"../temp/"+mtzname,"../temp/"+mapname+"_diff.map"] else: gemmiproc=["gemmi","sf2map","-s3","--mapmask=../temp/"+pdbname,"../temp/"+mtzname,"../temp/"+mapname+".map"] #print("<p>",gemmiproc,"</p>") gemmirun=subprocess.run(gemmiproc)