Untitled
unknown
plain_text
3 years ago
70 kB
5
Indexable
self = <galaxy_test.api.test_group_users.GroupUsersApiTestCase testMethod=test_delete> def test_delete(self): group_name = "group-with-user-to-delete" encoded_user_id = self.dataset_populator.user_id() group = self._create_group(group_name, encoded_user_ids=[encoded_user_id]) encoded_group_id = group["id"] group_users = self._get_group_users(encoded_group_id) assert len(group_users) == 1 delete_response = self._delete(f"groups/{encoded_group_id}/users/{encoded_user_id}", admin=True) self._assert_status_code_is_ok(delete_response) group_user = delete_response.json() > self._assert_valid_group_user(group_user, assert_id=encoded_user_id) lib/galaxy_test/api/test_group_users.py:92: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <galaxy_test.api.test_group_users.GroupUsersApiTestCase testMethod=test_delete> user = {'email': 'user@bx.psu.edu', 'id': 'eb142648ac45b77086610f67617bec2ad3808fd4409d175f', 'url': '/api/groups/adb5f5c93f827949/users/eb142648ac45b77086610f67617bec2ad3808fd4409d175f'} assert_id = 'adb5f5c93f827949' def _assert_valid_group_user(self, user, assert_id=None): self._assert_has_keys(user, "id", "email", "url") if assert_id is not None: > assert user["id"] == assert_id E AssertionError: assert 'eb142648ac45...08fd4409d175f' == 'adb5f5c93f827949' E - adb5f5c93f827949 E + eb142648ac45b77086610f67617bec2ad3808fd4409d175f lib/galaxy_test/api/test_group_users.py:137: AssertionError -----------------------------Captured stdout setup------------------------------ galaxy.jobs WARNING 2022-04-01 14:01:18,458 [pN:main,p:11817,tN:MainThread] Job configuration "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/config/sample" does not exist, using default job configuration galaxy.web_stack.handlers INFO 2022-04-01 14:01:18,476 [pN:main,p:11817,tN:MainThread] JobConfiguration: No job handler assignment method is set, defaulting to 'HANDLER_ASSIGNMENT_METHODS.DB_SKIP_LOCKED', set the `assign_with` attribute on <handlers> to override the default galaxy.jobs DEBUG 2022-04-01 14:01:18,476 [pN:main,p:11817,tN:MainThread] Done loading job configuration galaxy.security.vault WARNING 2022-04-01 14:01:18,727 [pN:main,p:11817,tN:MainThread] No vault configured. We recommend defining the vault_config_file setting in galaxy.yml galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,768 [pN:main,p:11817,tN:MainThread] Loading datatypes from /Users/himanshimathur/Desktop/galaxy/lib/galaxy/config/sample/datatypes_conf.xml.sample galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,773 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.h. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,774 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.c. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,774 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cpp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,774 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.py. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,774 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.go. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,774 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.rs. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,775 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension source.cs. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,775 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension hep.root. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,775 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:JP2 from the datatype registry for extension jp2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,775 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Ab1 from the datatype registry for extension ab1. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,778 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Amos from the datatype registry for extension afg. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,780 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.goldenpath:GoldenPath from the datatype registry for extension agp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,783 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_cog_profile. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,783 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_composite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,783 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension anvio_classifier. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,783 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioContigsDB from the datatype registry for extension anvio_contigs_db. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,783 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioDB from the datatype registry for extension anvio_db. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,784 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioGenomesDB from the datatype registry for extension anvio_genomes_db. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,784 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioPanDB from the datatype registry for extension anvio_pan_db. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,784 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioComposite from the datatype registry for extension anvio_pfam_profile. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,784 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioProfileDB from the datatype registry for extension anvio_profile_db. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,784 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioSamplesDB from the datatype registry for extension anvio_samples_db. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,784 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension anvio_state. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,784 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.anvio:AnvioStructureDB from the datatype registry for extension anvio_structure_db. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension anvio_variability. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Arff from the datatype registry for extension arff. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Paf from the datatype registry for extension paf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa1 from the datatype registry for extension gfa1. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Gfa2 from the datatype registry for extension gfa2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:GenericAsn1 from the datatype registry for extension asn1. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GenericAsn1Binary from the datatype registry for extension asn1-binary. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,785 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Axt from the datatype registry for extension axt. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,786 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:FeatureLocationIndex from the datatype registry for extension fli. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,786 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bam from the datatype registry for extension bam. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,786 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension bai. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,786 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamInputSorted from the datatype registry for extension qname_input_sorted.bam. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,786 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamQuerynameSorted from the datatype registry for extension qname_sorted.bam. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,786 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BamNative from the datatype registry for extension unsorted.bam. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,786 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ProBam from the datatype registry for extension probam. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,787 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CRAM from the datatype registry for extension cram. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,787 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed from the datatype registry for extension bed. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,787 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedGraph from the datatype registry for extension bedgraph. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,787 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:BedStrict from the datatype registry for extension bedstrict. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,787 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed6 from the datatype registry for extension bed6. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,787 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Bed12 from the datatype registry for extension bed12. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,787 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ProBed from the datatype registry for extension probed. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,789 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.chrominfo:ChromInfo from the datatype registry for extension len. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,789 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DAA from the datatype registry for extension daa. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,790 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RMA6 from the datatype registry for extension rma6. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,790 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DMND from the datatype registry for extension dmnd. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,790 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Parquet from the datatype registry for extension parquet. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,790 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Idat from the datatype registry for extension idat. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,790 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigBed from the datatype registry for extension bigbed. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,790 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BigWig from the datatype registry for extension bigwig. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,791 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cxb. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,791 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ChromatinInteractions from the datatype registry for extension chrint. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,791 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CSV from the datatype registry for extension csv. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,791 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension tsv. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,791 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:TSV from the datatype registry for extension intermine_tabular. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,791 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:CustomTrack from the datatype registry for extension customtrack. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,793 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieColorIndex from the datatype registry for extension bowtie_color_index. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,794 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.ngsindex:BowtieBaseIndex from the datatype registry for extension bowtie_base_index. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,794 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:csFasta from the datatype registry for extension csfasta. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,794 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Data from the datatype registry for extension data. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,794 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension gz. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,794 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension binary. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,795 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension d3_hierarchy. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,795 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:ImgtJson from the datatype registry for extension imgt.json. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,795 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:GeoJson from the datatype registry for extension geojson. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,795 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension data_manager_json. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,795 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:DotBracket from the datatype registry for extension dbn. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,795 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension fai. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,796 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fasta from the datatype registry for extension fasta. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,796 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastg from the datatype registry for extension fastg. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,796 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Fastq from the datatype registry for extension fastq. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,796 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSanger from the datatype registry for extension fastqsanger. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,797 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqSolexa from the datatype registry for extension fastqsolexa. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,797 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqCSSanger from the datatype registry for extension fastqcssanger. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,797 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:FastqIllumina from the datatype registry for extension fastqillumina. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,797 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:SequenceSplitLocations from the datatype registry for extension fqtoc. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,798 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Eland from the datatype registry for extension eland. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,798 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ElandMulti from the datatype registry for extension elandmulti. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,798 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tracks:GeneTrack from the datatype registry for extension genetrack. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,798 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff from the datatype registry for extension gff. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,798 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gff3 from the datatype registry for extension gff3. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,798 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gif from the datatype registry for extension gif. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,799 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gmaj from the datatype registry for extension gmaj.zip. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,799 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension graph_dot. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,799 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Gtf from the datatype registry for extension gtf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,799 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension toolshed.gz. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,799 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension h5. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,799 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Grib from the datatype registry for extension grib. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,799 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Loom from the datatype registry for extension loom. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,800 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Anndata from the datatype registry for extension h5ad. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,800 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5 from the datatype registry for extension mz5. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,800 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hyphy_results.json. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,800 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Json from the datatype registry for extension hivtrace. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,800 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Cool from the datatype registry for extension cool. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,800 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MCool from the datatype registry for extension mcool. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,800 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:H5MLM from the datatype registry for extension h5mlm. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,801 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:LudwigModel from the datatype registry for extension ludwig_model. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,801 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Html from the datatype registry for extension html. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,801 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Interval from the datatype registry for extension interval. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:18,801 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension jellyfish. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,500 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaTab from the datatype registry for extension isa-tab. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,500 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.isa:IsaJson from the datatype registry for extension isa-json. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,501 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension picard_interval_list. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,501 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_interval. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,501 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension gatk_report. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,501 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_dbsnp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,501 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_tranche. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,502 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension gatk_recal. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,502 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension hhr. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,502 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Jpg from the datatype registry for extension jpg. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,502 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tiff. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,502 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,502 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tf8. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,502 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension btf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,503 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension tif. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,503 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension svs. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,503 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension scn. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,503 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tiff from the datatype registry for extension bif. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,503 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:OMETiff from the datatype registry for extension ome.tiff. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,503 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vms. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension vmu. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Hamamatsu from the datatype registry for extension ndpi. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mirax from the datatype registry for extension mrxs. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Sakura from the datatype registry for extension svslide. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Bmp from the datatype registry for extension bmp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Im from the datatype registry for extension im. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcd from the datatype registry for extension pcd. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,504 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pcx from the datatype registry for extension pcx. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,505 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Ppm from the datatype registry for extension ppm. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,505 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Psd from the datatype registry for extension psd. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,505 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xbm from the datatype registry for extension xbm. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,505 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Xpm from the datatype registry for extension xpm. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,505 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rgb from the datatype registry for extension rgb. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,505 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pbm from the datatype registry for extension pbm. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,505 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pgm from the datatype registry for extension pgm. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,506 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nrrd. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,506 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nrrd from the datatype registry for extension nhdr. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,506 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:RNADotPlotMatrix from the datatype registry for extension rna_eps. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,506 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension zip. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,506 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedZipArchive from the datatype registry for extension ncbi_genome_dataset.zip. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,506 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,507 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Directory from the datatype registry for extension directory. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,507 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Yaml from the datatype registry for extension yaml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,507 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension mrm. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,512 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta from the datatype registry for extension dta. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,512 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Dta2d from the datatype registry for extension dta2d. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,513 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Edta from the datatype registry for extension edta. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,513 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension pepxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,513 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension raw_pepxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,513 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension peptideprophet_pepxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,513 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXml from the datatype registry for extension interprophet_pepxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,514 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXML from the datatype registry for extension protxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,514 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ParamXml from the datatype registry for extension paramxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,514 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Kroenik from the datatype registry for extension kroenik. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,514 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepList from the datatype registry for extension peplist. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,514 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PSMS from the datatype registry for extension psms. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PepXmlReport from the datatype registry for extension pepxml.tsv. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ProtXmlReport from the datatype registry for extension protxml.tsv. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotDat from the datatype registry for extension mascotdat. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzIdentML from the datatype registry for extension mzid. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:IdXML from the datatype registry for extension idxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TandemXML from the datatype registry for extension tandem. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension sirius.ms. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,515 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ThermoRAW from the datatype registry for extension thermo.raw. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,516 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BafTar from the datatype registry for extension brukerbaf.d.tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,516 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:YepTar from the datatype registry for extension agilentbrukeryep.d.tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,516 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TdfTar from the datatype registry for extension brukertdf.d.tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,516 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassHunterTar from the datatype registry for extension agilentmasshunter.d.tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,516 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MassLynxTar from the datatype registry for extension watersmasslynx.raw.tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,516 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:WiffTar from the datatype registry for extension wiff.tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,516 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MascotXML from the datatype registry for extension mascotxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab from the datatype registry for extension mztab. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzTab2 from the datatype registry for extension mztab2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzML from the datatype registry for extension mzml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:NmrML from the datatype registry for extension nmrml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Meryldb from the datatype registry for extension meryldb. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bref3 from the datatype registry for extension bref3. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Mgf from the datatype registry for extension mgf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,517 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Wiff from the datatype registry for extension wiff. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzXML from the datatype registry for extension mzxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzData from the datatype registry for extension mzdata. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Ms2 from the datatype registry for extension ms2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:MzQuantML from the datatype registry for extension mzq. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQlite from the datatype registry for extension sqlite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:MzSQlite from the datatype registry for extension mz.sqlite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:OSW from the datatype registry for extension osw. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PQP from the datatype registry for extension pqp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,518 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TraML from the datatype registry for extension traml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:TrafoXML from the datatype registry for extension trafoxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:FeatureXML from the datatype registry for extension featurexml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ConsensusXML from the datatype registry for extension consensusxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:UniProtXML from the datatype registry for extension uniprotxml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestXML from the datatype registry for extension xquest.xml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XquestSpecXML from the datatype registry for extension spec.xml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:QCML from the datatype registry for extension qcml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Msp from the datatype registry for extension msp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,519 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLibNoIndex from the datatype registry for extension splib_noindex. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:SPLib from the datatype registry for extension splib. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BlibSQlite from the datatype registry for extension blib. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:DlibSQlite from the datatype registry for extension dlib. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ElibSQlite from the datatype registry for extension elib. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:XHunterAslFormat from the datatype registry for extension hlf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:IdpDB from the datatype registry for extension idpdb. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:Sf3 from the datatype registry for extension sf3. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension cps. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,520 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:ConnectivityTable from the datatype registry for extension ct. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,521 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:PostgresqlArchive from the datatype registry for extension postgresql. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,521 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SearchGuiArchive from the datatype registry for extension searchgui_archive. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,521 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5Archive from the datatype registry for extension fast5.tar. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,521 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveGz from the datatype registry for extension fast5.tar.gz. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,521 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Fast5ArchiveBz2 from the datatype registry for extension fast5.tar.bz2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,522 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension peptideshaker_archive. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,522 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension percin. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,522 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension percout. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,522 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension hardklor. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,522 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension kronik. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,523 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:ImzML from the datatype registry for extension imzml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,523 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Analyze75 from the datatype registry for extension analyze75. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,523 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti1 from the datatype registry for extension nii1. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,523 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Nifti2 from the datatype registry for extension nii2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,524 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Gifti from the datatype registry for extension gii. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,524 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Tck from the datatype registry for extension tck. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,524 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Trk from the datatype registry for extension trk. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,524 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Mrc2014 from the datatype registry for extension mrc. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,524 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Star from the datatype registry for extension star. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,524 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.proteomics:PEFF from the datatype registry for extension peff. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,524 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension toml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,526 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.flow:FCS from the datatype registry for extension fcs. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,527 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowtext. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,527 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowclr. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,527 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowmfi. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,527 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat1. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,528 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat2. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,528 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowstat3. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,528 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension flowscore. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,528 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowframe. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,528 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension fsom. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,529 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:RData from the datatype registry for extension flowset. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,529 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension metacyto_clr.txt. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,531 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mSummary from the datatype registry for extension metacyto_summary.txt. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,531 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.metacyto:mStats from the datatype registry for extension metacyto_stats.txt. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,531 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_compute_matrix_archive. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,532 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CompressedArchive from the datatype registry for extension deeptools_coverage_matrix. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,532 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NetCDF from the datatype registry for extension netcdf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,532 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Eps from the datatype registry for extension eps. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,532 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Rast from the datatype registry for extension rast. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,532 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Laj from the datatype registry for extension laj. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,533 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Lav from the datatype registry for extension lav. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,533 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:Maf from the datatype registry for extension maf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,533 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MafCustomTrack from the datatype registry for extension mafcustomtrack. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,533 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:MatrixMarket from the datatype registry for extension mtx. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,533 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:CMAP from the datatype registry for extension cmap. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,533 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:ENCODEPeak from the datatype registry for extension encodepeak. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Pdf from the datatype registry for extension pdf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Pileup from the datatype registry for extension pileup. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:Obo from the datatype registry for extension obo. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Owl from the datatype registry for extension owl. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.images:Png from the datatype registry for extension png. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore from the datatype registry for extension qual. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSolexa from the datatype registry for extension qualsolexa. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,534 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreIllumina from the datatype registry for extension qualillumina. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,535 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScoreSOLiD from the datatype registry for extension qualsolid. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,535 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.qualityscore:QualityScore454 from the datatype registry for extension qual454. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,535 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Roadmaps from the datatype registry for extension roadmaps. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,535 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Sam from the datatype registry for extension sam. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,535 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Scf from the datatype registry for extension scf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,535 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Sequences from the datatype registry for extension sequences. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,537 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.gis:Shapefile from the datatype registry for extension shp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,538 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpEffDb from the datatype registry for extension snpeffdb. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,538 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.text:SnpSiftDbNSFP from the datatype registry for extension snpsiftdbnsfp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,538 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension dbnsfp.tabular. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,539 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sff from the datatype registry for extension sff. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,539 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Sra from the datatype registry for extension sra. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,539 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:SraManifest from the datatype registry for extension sra_manifest.tabular. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,539 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension svg. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,540 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Taxonomy from the datatype registry for extension taxonomy. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,540 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Tabular from the datatype registry for extension tabular. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,540 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:TwoBit from the datatype registry for extension twobit. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,540 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:SQmass from the datatype registry for extension sqmass. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,541 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GeminiSQLite from the datatype registry for extension gemini.sqlite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,541 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:ChiraSQLite from the datatype registry for extension chira.sqlite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,541 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:CuffDiffSQlite from the datatype registry for extension cuffdiff.sqlite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,541 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:GAFASQLite from the datatype registry for extension gafa.sqlite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,541 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:NcbiTaxonomySQlite from the datatype registry for extension ncbitaxonomy.sqlite. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,541 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:Text from the datatype registry for extension txt. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,542 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.data:LineCount from the datatype registry for extension linecount. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,542 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.sequence:MemePsp from the datatype registry for extension memepsp. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,542 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:MEMEXml from the datatype registry for extension memexml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,542 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:CisML from the datatype registry for extension cisml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,542 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:GenericXml from the datatype registry for extension xml. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,542 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.xml:Dzi from the datatype registry for extension dzi. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,543 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.tabular:Vcf from the datatype registry for extension vcf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,543 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,543 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Bcf from the datatype registry for extension bcf_bgzip. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,543 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:BcfUncompressed from the datatype registry for extension bcf_uncompressed. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,543 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.assembly:Velvet from the datatype registry for extension velvet. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,544 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.interval:Wiggle from the datatype registry for extension wig. galaxy.datatypes.registry DEBUG 2022-04-01 14:01:19,544 [pN:main,p:11817,tN:MainThread] Retrieved datatype module galaxy.datatypes.binary:Binary from the datatype registry for extension interval_index. Traceback (most recent call last): File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 835, in _load_tool_tag_set tool = self.load_tool(concrete_path, use_cached=False, tool_cache_data_dir=tool_cache_data_dir) File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/tool_util/toolbox/base.py", line 1067, in load_tool **kwds, File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/tools/__init__.py", line 384, in create_tool tool_source = self.get_expanded_tool_source(config_file) File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/tools/__init__.py", line 401, in get_expanded_tool_source raise e File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/tools/__init__.py", line 396, in get_expanded_tool_source **kwargs, File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/tool_util/parser/factory.py", line 86, in get_tool_source as_dict = ordered_load(f) File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/util/yaml_util.py", line 69, in ordered_load return yaml.load(stream, OrderedLoader) File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/__init__.py", line 81, in load return loader.get_single_data() File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 51, in get_single_data return self.construct_document(node) File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 60, in construct_document for dummy in generator: File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 408, in construct_yaml_seq data.extend(self.construct_sequence(node)) File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 130, in construct_sequence for child in node.value] File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 130, in <listcomp> for child in node.value] File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 100, in construct_object data = constructor(self, node) File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/util/yaml_util.py", line 47, in construct_mapping value = loader.construct_object(value_node, deep=deep) File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 100, in construct_object data = constructor(self, node) File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/util/yaml_util.py", line 47, in construct_mapping value = loader.construct_object(value_node, deep=deep) File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 100, in construct_object data = constructor(self, node) File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/util/yaml_util.py", line 47, in construct_mapping value = loader.construct_object(value_node, deep=deep) File "/Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages/yaml/constructor.py", line 100, in construct_object data = constructor(self, node) File "/Users/himanshimathur/Desktop/galaxy/lib/galaxy/util/yaml_util.py", line 54, in construct_mapping key_node.start_mark, yaml.constructor.ConstructorError: while constructing a mapping in "/Users/himanshimathur/Desktop/galaxy/test/functional/tools/simple_constructs.yml", line 105, column 9 found duplicated key (has_line) galaxy.webapps.galaxy.buildapp DEBUG 2022-04-01 14:01:32,830 [pN:main,p:11817,tN:MainThread] Prior to webapp return, Galaxy thread <Thread(Thread-3, started daemon 123145484574720)> is alive. asyncio DEBUG 2022-04-01 14:01:35,796 [pN:main,p:11817,tN:MainThread] Using selector: KqueueSelector uvicorn.error INFO 2022-04-01 14:01:35,952 [pN:main,p:11817,tN:Thread-7] Started server process [11817] uvicorn.error INFO 2022-04-01 14:01:35,954 [pN:main,p:11817,tN:Thread-7] Waiting for application startup. uvicorn.error INFO 2022-04-01 14:01:35,955 [pN:main,p:11817,tN:Thread-7] Application startup complete. uvicorn.error INFO 2022-04-01 14:01:35,956 [pN:main,p:11817,tN:Thread-7] Uvicorn running on http://127.0.0.1:9329 (Press CTRL+C to quit) INFO: 127.0.0.1:64181 - "GET / HTTP/1.1" 200 OK test_driver INFO 2022-04-01 14:01:36,141 [pN:main,p:11817,tN:MainThread] Embedded uvicorn web server for galaxy started at 127.0.0.1:9329/ -----------------------------Captured stderr setup------------------------------ INFO: Started server process [11817] INFO: Waiting for application startup. INFO: Application startup complete. INFO: Uvicorn running on http://127.0.0.1:9329 (Press CTRL+C to quit) -------------------------------Captured log setup------------------------------- INFO test_driver:driver_util.py:624 Galaxy database connection: sqlite:////private/var/folders/dk/zgt4vjz52js4m8kpfvxxj_zh0000gp/T/tmpwnurxrbi/tmphqnlfz90/tmpjko7xiwz/database/galaxy.sqlite DEBUG galaxy.app:app.py:439 python path is: /Users/himanshimathur/Desktop/galaxy/lib, /Users/himanshimathur/Desktop/galaxy/venv/bin, /Users/himanshimathur/.pyenv/versions/3.7.3/lib/python37.zip, /Users/himanshimathur/.pyenv/versions/3.7.3/lib/python3.7, /Users/himanshimathur/.pyenv/versions/3.7.3/lib/python3.7/lib-dynload, /Users/himanshimathur/Desktop/galaxy/venv/lib/python3.7/site-packages DEBUG galaxy.config:__init__.py:328 Configuration directory is /Users/himanshimathur/Desktop/galaxy/lib/galaxy/config/sample DEBUG galaxy.config:__init__.py:329 Data directory is /private/var/folders/dk/zgt4vjz52js4m8kpfvxxj_zh0000gp/T/tmpwnurxrbi/tmphqnlfz90/tmpjko7xiwz/database DEBUG galaxy.config:__init__.py:330 Managed config directory is /Users/himanshimathur/Desktop/galaxy/lib/galaxy/config/sample DEBUG galaxy.app:app.py:448 Using "galaxy.ini" config file: lib/galaxy/config/sample/galaxy.yml.sample INFO galaxy.model.migrations:__init__.py:437 Creating database for URI [sqlite:////private/var/folders/dk/zgt4vjz52js4m8kpfvxxj_zh0000gp/T/tmpwnurxrbi/tmphqnlfz90/tmpjko7xiwz/database/galaxy.sqlite] INFO alembic.runtime.migration:migration.py:201 Context impl SQLiteImpl. INFO alembic.runtime.migration:migration.py:208 Will assume non-transactional DDL. INFO alembic.runtime.migration:migration.py:615 Running stamp_revision -> b182f655505f DEBUG alembic.runtime.migration:migration.py:815 new branch insert b182f655505f INFO alembic.runtime.migration:migration.py:201 Context impl SQLiteImpl. INFO alembic.runtime.migration:migration.py:208 Will assume non-transactional DDL. INFO alembic.runtime.migration:migration.py:615 Running stamp_revision -> d4a650f47a3c DEBUG alembic.runtime.migration:migration.py:815 new branch insert d4a650f47a3c INFO galaxy.app:app.py:382 Install database targeting Galaxy's database configuration. DEBUG galaxy.web_stack:__init__.py:57 WeblessApplicationStack initialized ------------------------------Captured stdout call------------------------------ INFO: 127.0.0.1:64182 - "GET /api/users HTTP/1.1" 200 OK INFO: 127.0.0.1:64183 - "POST /api/users HTTP/1.1" 200 OK INFO: 127.0.0.1:64184 - "POST /api/users/adb5f5c93f827949/api_key HTTP/1.1" 200 OK INFO: 127.0.0.1:64185 - "GET /api/users HTTP/1.1" 200 OK INFO: 127.0.0.1:64186 - "POST /api/groups HTTP/1.1" 200 OK INFO: 127.0.0.1:64187 - "GET /api/groups/adb5f5c93f827949/users HTTP/1.1" 200 OK INFO: 127.0.0.1:64188 - "DELETE /api/groups/adb5f5c93f827949/users/adb5f5c93f827949 HTTP/1.1" 200 OK INFO: 127.0.0.1:64189 - "GET /api/jobs?state=running&?user_details=true HTTP/1.1" 200 OK
Editor is loading...