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<?xml version="1.0" encoding="UTF-8" standalone="no"?><beast beautitemplate='Standard' beautistatus='' namespace="beast.core:beast.evolution.alignment:beast.evolution.tree.coalescent:beast.core.util:beast.evolution.nuc:beast.evolution.operators:beast.evolution.sitemodel:beast.evolution.substitutionmodel:beast.evolution.likelihood" required="" version="2.6"> <data id="alignedSegment1" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/1918" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnnnatggaaagaataaaagaactaagggatctaatgtcgcagtctcgcactcgcgagatactcacaaaaaccaccgtggaccatatggccataatcaagaagtacacatcaggaagacaggagaagaaccccgcacttaggatgaaatggatgatggcaatgaaatatccaattacagcagacaagaggataatggaaatgattcctgagagaaatgagcaaggacaaactctatggagtaaaacgaacgatgccggatcagaccgagtgatggtatcacctctggctgtgacatggtggaataggaatggaccaacgacaagtgcagttcactatccaaaaatctacaaaacttattttgaaaaagtcgaaaggttaaaacatggaacctttggccctgtccatttcagaaaccaagtcaaaatacgtcgaagagttgacataaatcctggtcatgcagatctcagtgccaaagaggcacaggatgtaatcatggaagttgttttcccaaacgaagtgggagccaggatactaacatcggaatcgcaactgacaataaccaaagaaaagaaagaagaactccaagattgtaaaatttctcctttaatggtggcatacatgttggagagagaactggtccgaaaaacaagattcctcccagtggctggtgggacaagcagtgtgtatattgaagtgttgcatttgactcaaggaacatgctgggaacagatgtacactccaggaggggaagtgaggaatgatgatgttgatcaaagcttaattattgctgctaggaacatagtgagaagagcgacagtgtcagcagatccactagcatctctgttggaaatgtgccacagcacacagattggtggaataaggatggtagacatccttaggcagaacccgacagaagagcaagccgtggatatatgcaaggcagcaatgggcctgagaattagctcatcctttagctttggcggattcacatttaagaggacaagtggctcatcagtcaagagggaggaagaagtgcttacaggcaatcttcaaacattgaagataagagtgcatgagggatatgaagagttcacaatggttgggagaagagcaacagctatactcagaaaagcgaccaggagattgattcagctgatagtgagtgggagagacgaacagtcgattgccgaggcaataattgtggccatggtattttcacaagaggattgtatgataaaggcagttaggggtgatctgaatttcgttaatagggcgaatcagcgattgaatcctatgcatcaacttttgaggcattttcaaaaggatgcgaaagtgctttttcaaaattggggaattgaacccatcgacaatgtgatgggaatgattgggatactgcccgacatgactccaagtactgagatgtcaatgagaggagtgagagtcagcaaaatgggagtagatgagtactccagcacagagagggtggtggtgagcattgaccgctttttaagagtccgggaccaacgaggaaacgtactactgtctcctgaggaggtcagcgaaacacagggaacagagaaattgacgataacttattcatcgtcaatgatgtgggaggttaatggccctgaatcagtgttggtcaacacctatcagtggatcatcagaaactgggaaactgttaaaattcagtggtcacagaatcctacaatgctatacaataaaatggaatttgagccatttcagtctttagttcctaaggccgctagaggtcaatacagtgggtttgtgagaactctgttccagcaaatgagggatgtgcttgggacatttgacaccgttcagataataaaacttcttccctttgcagccgctccaccaaagcaaagtagaatgcagttctcctctctgactgtgaatgtgagaggatcaggaatgagaatacttgtaaggggcaattctcccgtattcaactacaacaaggccactaagagactcacagttctcggaaaggatgcaggtgctttaactgaagacccagatgaaggcacagctggagtggagtctgctgttctgagaggattcctcattctgggcaaagaagacaggagatatgggccagcattaagcatcaatgaactgagcaatcttgcgaaaggggagaaggctaatgtgctaattgggcaaggagacgtggtgttggtaatgaaacggaaacgggactctagcatacttactgacagccagacagcgaccaaaagaattcggatggccatcaattagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/Hickox/1940" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" 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<sequence id="seq_A/WSN/1933" spec="Sequence" taxon="A/WSN/1933" totalcount="4" 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<sequence id="seq_A/Wilson-Smith/1933" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" value="nnnnnnnnnnnntcaattatattcaatatggaaagaataaaagaactaaggaatctaatgtcgcagtctcgcactcgcgagatactcacaaaaaccaccgtggaccatatggccataatcaagaagtacacatcaggaagacaggagaagaacccagcacttaggatgaaatggatgatggcaatgaaatatccaattacagcagacaagaggataacggaaatgattcctgagagaaatgagcaaggacaaactttatggagtaaaatgaatgacgccggatcagaccgagtgatggtatcacctctggctgtgacatggtggaatagaaatggaccagtgacaagtacagttcattatccaaaaatctacaaaacttattttgaaaaagtcgaaaggttaaaacatggaacctttggccctgtccattttagaaaccaagtcaaaatacgtcgaagagttgacataaatcctggtcatgcagatctcagtgccaaagaggcacaggatgtaatcatggaagttgttttccctaacgaagtgggagcccggatactaacatcggaatcgcaactaacgataaccaaagagaagaaagaagaactccagggttgcaaaatttctcctttgatggtggcatacatgttggagagagaactggtccgcaaaacgagattcctcccagtggctggtggaacaagcagtgtgtacattgaagtgttgcatttgactcaaggaacatgctgggaacagatgtacactccaggaggggaggtgaggaatgatgatgttgatcaaagcttaattattgctgctaggaacatagtaagaagagccacagtatcagcagatccactagcatctttattggagatgtgccacagcacgcagattggtggaataaggatggtagacatccttaggcagaacccaacagaagagcaagccgtggatatatgcaaggctgcaatgggactgagaattagctcatccttcagttttggtggattcacatttaagagaacaagcggatcatcagtcaagagagaggaagaggtgcttacgggcaatcttcagacattgaagataagagtgcatgagggatatgaagagttcacaatggttgggagaagagcaacagctatactcagaaaagcaaccaggagattgattcagctgatagtgagtgggagagacgaacagtcgattgccgaagcaataattgtggccatggtattttcacaagaggattgtataataaaagcagttagaggtgacctgaatttcgtcaatagggcgaatcagcgattgaatcccatgcaccaacttttgagacattttcagaaggatgcaaaagtgctctttcaaaattggggaattgaatccatcgacaatgtgatgggaatgattgggatattgcccgacatgactccaagcaccgagatgtcaatgagaggagtgagagtcagcaaaatgggggtagatgagtattccagcgcggagaaggtagtggtgagcattgaccgttttttgagagtcagggaccaacgtgggaatgtactactgtctcccgaggaggtcagtgaaacacagggaacagagaaactgacaataacttactcatcgtcaatgatgtgggagattaatggtcctgaatcagtgttggtcaatacctatcagtggatcatcagaaactgggaaactgttaaaattcagtggtcccagaatcctgcaatgctgtacaataaaatggaatttgagccatttcagtctttagttccaaaggccgttagaggccaatacagtgggtttgtgagaactctgttccaacaaatgagggatgtgcttgggacatttgataccgctcagataataaaacttcttcccttcgcagccgctccaccaaagcaaagtagaatgcagttctcctcattgactgtgaatgtgaggggatcaggaatgagaatacttgtaaggggcaattctccagtattcaactacaacaagaccactaaaagactcacagttctcggaaaggatgctggcactttaactgaagacccagatgaaggcacagctggagtggagtccgcagttctgagaggattcctcattctgggcaaagaagacaggagatatggaccagcattaagcataaatgaactgagcaaccttgcgaaaggagagaaggctaatgtgctaattgggcaaggagacgtggtgttggtaatgaaacggaaacggaactctagcatacttactgacagccagacagcgaccaaaagaattcggatggccatcaattagtgtcgaatagtttaaaaannnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/Ohio/23/1935" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" value="nnnnnnnnnnnntcaaatatattcaatatggagagaataaaagaactaagggatctaatgtcacagtctcgcactcgcgagatactcacaaggaccaccgtggaccatatggccataatcaagaaatacacatcaggaagacaagagaaaaaccccgcacttagaatgaaatggatgatggcaatgaaatatccaattacagcagacaagaggataattgagacaattcctgagagaaatgaacaaggacaaaccctatggagtaaaacgagcgatgccggatcagaccgagtgatggtatcacctctggctgtgacatggtggaataggaatggaccaacgacaagtacagttcactatccaaaagtctacaaaacttactttgagaaagtcgaaaggttaaaacatggaacttttggccctgttcatttcagaaaccaagtcaaaatacgtcgaagggttgacataaatccaggtcatgcagatctcagtgccaaagaagcacaagatgttatcatggaagttgttttcccaaacgaagtgggagccagaatattgacatcggaatcgcagctaatgattactaaagaaaagaaagaagaactccaggagtgcaaaatttctcctttaatggtggcatacatgttggagagagaactggttcgcaaaacaagattcctcccagtggctggtgggacaagcagtgtgtacattgaggtgttgcatttgactcagggaacatgctgggaacagctatacactccagggggggaagtgaggaacgatgatgttgaccaaagcttaattattgctgctaggagcatagtgagaagagcgacagtatctgcagatccactggcatctctgttggaaatgtgccacagcacacagattggtggaataaggatggtggacatcctcaggcagaacccgacagaagagcaggccgtggatatatgcaaggcagcaatgggtctgagaattagctcatcctttagctttggcgggttcacgttcaaaagaacaagtggctcatcagtcaagaaagaggaggaagtacttacgggcaatctccaaacattgaagataagagtgcatgagggatatgaagaattcacaatggttgggagaagggcaacagctatactcagaaaagcgactaggagattggttcagctaatagtgagtgggagagacgaacagtcgattgccgaggcaataatcgtggccatggtgttttcacaagaggattgtatgataaaggcagttaggggtgatctgaatttcgttaatagggtgaaccagcgattgaaccctatgcaccaacttttaagacattttcaaaaggatgcaaaagtgctttttcaaaattggggaattgaacccatagacaatgtaatgggaatgattgggatactgcccgacttaactccaagcactgagatgtcaatgaggggagtgagaatcagtaagatgggagtagatgagtactccagcacagagagggtggtggtgagcattgaccgttttttaagagtccgagaccaacgagggaacgtgctattgtctcctgaggaggtcagcgaaacacagggaacagagaagttgacgataacttattcatcgtcaatgatgtgggaggttaatggccctgaatcagtgttggtaaacacctaccagtggatcatcagaaactgggaaactgttaaaattcagtggtcacaggatcctacaatgctgtacaataaaatggaatttgaaccattccaatctttggttcctaaggctgcaagaggtcaatacagtgggtttgtgagaactctattccagcaaatgagggatgtgcttggaacatttgacactgttcagataataaaacttctcccctttgcagctgctccaccaaagcagagtagaatgcagttttcttctctgaccgtgaatgtaagaggatcaggaatgagaatacttgtaaggggcaattctcctgtgttcaactacaacaaggccactaagagactcacagttctcggaaaggatgcaggtgctttaactgaagacccagatgaagggacaactggagtggagtctgctgttttgagaggattcctcattctgggcaaagaagacaggagatatgggccagcattaagcatcaatgaactgagaaatcttgcaaaaggggagaaggctaatgtactaattggacaaggagacgtggtgttggtaatgaaacggaaacgggactctagcatacttactgacagccagacagcgaccaaaagaattcgaatggccatcaattagtgtcaaatagtttannnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/USA/1976/1931" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" 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</data> <data id="alignedSegment4" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/19183" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" 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<sequence id="seq_A/Hickox/19403" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" 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<sequence id="seq_A/WSN/19333" spec="Sequence" taxon="A/WSN/1933" totalcount="4" 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<sequence id="seq_A/Wilson-Smith/19333" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" value="nnnnnnnnnnnnngaaaataaaaacaaccaaaatgaaggcaagactactggtcctgttatgtgcacttgcagctacagatgcagacacaatatgtataggctaccatgcgaacaactcaaccgacactgttgacacactactcgagaagaatgtgacagtgacacattctgttaacctgctcgaagacagccacaacgggaaactatgtaaattaaaaggaatagccccactacaattggggaaatgtaacatcgccggatggctcttgggaaacccagaatgcgactcactgcttccagcgagatcatggtcctacattgtagaaacaccaaactctgagaatggagcatgttatccaggagatttcatcgactatgaggaactgaaggagcaattgagctcagtatcatcattagaaagattcgaaatatttcccaaggaaagttcatggcccaaccacaacacactcaaaggagtaacagcatcatgctcccatgggggaaaaagcagtttttacagaaatttgctatggctgacgaaaamgggggaytcatacccaaagctgaacaattcctatgtgaacaataaagggaaagaagtccttgtactatggggtgttcatcacccgtctagcagtaatgagcaacagagtctctatcataatgtaaatgcttatgtctctgtagtgtcttcaaattataacaggagattcaccccggaaatagctgcaagacccaaagtaagagatcaacctgggaggatgaactattactggaccttgctagaacccggagacacaataatatttgaggcaactggtaatctaatagcaccatggtatgctttcgcactgagtagaggatttgggtccggcatcatcacctcaaacgcgtcaatgcatgagtgtaacacgaagtgtcaaacaccccagggagctataaacagcagtctccctttccagaatatacacccagtcacaataggagagtgcccaaaatatgtcaggagtaccaaattgaggatggttacaggactaagaaacatcccatccattcaatccagaggtctatttggagccattgctggttttattgaggggggatggactggaatgatagatggatggtatggttatcatcatcagaatgaacagggatcaggctatgcagcggatcaaaaaagcacacaaaatgccattaacgggattacaaacaaggtgaactctgttatcgagaaaatgaacactcaattcacagctgtgggtaaagaattcaacaacttagaaaaaaggatggaaaatttaaataaaaaagttgatgatggatttctggacatttggacatataatgcagaattgttagttctactggaaaatgaaaggactttggatttccatgacttaaatgtgaagaatctgtacgagaaagtaaaaagccaattaaagaataatgccaaagaaatcggaaatgggtgttttgagttctaccacaagtgtgacaatgaatgcatggaaagtgtaagaaatgggacttatgattatccaaaatattcagaagaatcaaagttgaacagggaaaagatagatggagtgaaattggaatcaatgggggtgtatcagattctggcgatctactcaactgtcgccagttcactggtgcttttggtctccctgggggcaatcagtttctggatgtgttctaatgggtctttgcagtgcagaatatgcatctgagattaggatttcagaaatataaggaaaaannnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/Ohio/23/19353" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" 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<sequence id="seq_A/swine/USA/1976/19313" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatgaaggcaagactattagtcttgttatgtgcatttgcagctacaaatgcagacacactatgtataggttaccatgcaaataactcaaccgacacagttgacacagtactcgagaagaatgtaaccgtgacacactctgttaacctgcttgaagacagccacaatggaaaactatgtagactgggaggaatagccccattacaactggggaaatgtaatattgccggatggctcttgggaaacccagaatgcgatttgctgctcacagtgagctcatggtcctatattgtagaaacatcggactcagataatgggacatgttacccaggagatttcatcgactatgaagaactgagagagcaactgaactcaatgtcatcattcgaaaaattcgagatatttcccaagacaagctcgtggcccaatcatgaaacaaccaaaggtgtaacggcagcatgcccctatgctggagcaagcagcttttacagaaacttactatggctggtaaagaaggaaaattcatacccaaagcttagcaaatcctatgttaacaataaaggaaaagaagtccttgtgctatggggtgttcatcatccgcctaccagtactgatcaacaaagtctctatcaaaatgcagatgcttatgtttctgtagggtcatcaaaatattacaggaggttcactccagaaatagcagcgagacccaaagtgagaggtcaggcagggaggatgaactattactggacattactagaacccggagacacaataacatttgaggcaactggaaatttagtggcaccaagatatgctttcgcactgaatagaggttctggatccggtatcatcacttcaaacgcaccagtgcatgattgtgacacgaagtgtcaaacacctcatggtgccataaacagcagtctccctttccagaatgtacatccagtcacaataggagagtgcccaaaatacgtcaagagtaccaaattaaggatggttacaggactaagaaacatcccatctatccagtctagaggtctgtttggagccattgccggttttattgaggggggatggactggattgatagatggatggtatggttaccatcatcagaatggacagggatcaggctatgcagcggaccaaaagagcacacaaaatgccattgacgggattactaacaaggtgaattctgttatcgagaagatgaacacgcaattcacagcagtgggtaaagaattcaacaacctagaaagaaggatagaaaatttaaataaaaaagtcgatgatggatttctggatatttggacatataatgcagaactgttagttctattggaaaatgagaggactctggatttccatgactcaaatgtaaagaacctgtatgagaaagtaagaagccaactaaggaataatgccaaggaaatcgggaatggatgctttgaattctaccacaaatgtgatgatgcatgcatggaaagcgtcagaaatgggacttatgattacccaaagtattcagaagaatcaaaattgaacagagaagaaatagatggtgtgaaattggaatcaatgatggtctatcagattctggcgatctattcaaccgtcgccagttcactagtactgttagtctccctgggggcaatcagcttctggatgtgttctaatgggtctttgcagtgcagaatatgcatttaaaactagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn"/> </data> <data id="alignedSegment5" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/19184" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgtctcaaggcaccaaacgatcttacgaacagatggagactgatggggaacgccagaatgccactgaaatcagagcatctgtcggaagaatgattggtggaattggacgattctacatccaaatgtgcaccgaacttaaactcagtgattatgagggacggctgatccagaacagcataacaatagagagaatggtgctctctgcttttgacgagaggaggaataaatatctggaagaacatcccagcgctgggaaagaccctaagaaaactggaggacccatatacaggagaatagatggaaagtggatgagagaactcatcctttatgacaaagaagaaataaggagaatctggcgccaagctaataatggtgaagatgcaacagctggtctgactcacatgatgatctggcattccaatttgaatgatgccacttatcagaggacaagagctcttgttcgcaccggaatggatcccaggatgtgctctctgatgcaaggttcaactctccctaggaggtctggagccgcaggtgctgcagtcaaaggagttggaacaatggtgatggagttgatcaggatgatcaaacgtgggatcaatgatcggaacttctggaggggtgagaatggacgaaggacaagaattgcctatgaaagaatgtgcaacattctcaaagggaaatttcaaacagctgcacagagagcaatgatggatcaagtgagagagagccggaatccaggaaatgctgaaattgaagatctcatctttctggcacggtctgcactcatattgagagggtcagttgctcacaagtcctgcctgcctgcctgtgtgtatggacctgctgtagccagtggatacgactttgaaagagagggatactctctggtcggaatagaccctttcagactgcttcaaaacagccaagtatacagtctaatcagaccaaatgagaatccagcacacaagagtcaactggtatggatggcatgccattctgctgcatttgaagatctgagagtatcaagcttcatcagagggacaagagtggttccaagagggaagctttccactagaggggttcagattgcttccaatgaaaacatggagactatggactccagtacccttgaactgagaagcagatactgggccataaggaccagaagtggaggaaacactaatcaacagagggcatctgcgggccaaatcagcgtgcaacctacattctcagtacagagaaacctcccttttgagagagcaaccattatggcagcattcactgggaacacagaggggagaacatctgacatgagaaccgaaatcataaggatgatggaaagtgcaagaccagaagatgtgtctttccaggggcggggagtcttcgagctctcggacgaaaaggcaacgagcccgatcgtgccttcctttgacatgagtaatgaaggatcttatttcttcggagacaatgcagaggagtacgacaattaannnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/Hickox/19404" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" value="nnnnnnnnnnnnnnnnnnnntcactcactgagtgacatcataatcatggcgtcccaaggcaccaaacggtcttacgaacagatggagactgatggggaacgccagaatgccactgaaatcagagcatccgtcggaaaaatgattagtggaattggacgattctacatccaaatgtgcaccgaacttaaactcagtgattatgagggacggctgatccagaacagcttaacaatagagagaatggtgctctctgcttttgacgagaggaggaataaatatctggaagaacatcccagcgcagggaaagatcctaagaaaactggaggacccatatacaagagagtaggtggaaagtggatgagggaactcatcctttatgacaaagaagaaataaggcgaatctggcgccaagctaataatggtgatgatgcaacggctggtctgactcacatgatgatctggcattccaatttgaatgatacaacttatcagaggacaagagctcttgtccgcaccggaatggatcccaggatgtgctctctgatgcagggttcaactctccctaggaggtctggagccgcaggcgctgcagtcaaaggagttgggacaatggtgatggagttgatcaggatgatcaaacgtgggatcaatgatcgaaacttctggaggggtgagaatggacgaaaaacaaggattgcttatgagagaatgtgcaacattctcaaagggaaatttcaaacagctgcacaaagagcaatgatggatcaagtgagagaaagccggaatccaggaaatgctgagatcgaagatctcatctttctggcacggtctgcactcatattgagagggtcagttgctcacaagtcttgcctgcctgcctgtgtgtatggacctgcagtagccagcggatacgacttcgaaagagagggatactctctagtcggaatagaccctttcaaactgcttcaaaacagccaagtatacagcctaataagaccaaacgagaatccagcacacaagagtcagctggtgtggatggcatgcaattctgctgcatttgaagatctaagagtatcaagcttcatcagagggacaaaggtagtcccaagggggaggctttccactagaggagttcaaattgcttcaaatgaaaacatggatactatggaatcaagtactcttgaactgagaagcaggtactgggccataaggaccagaagtggaggaaacactaatcaacagagggcttctgcaggccaaatcagcatacaacctacgttttctgtacagagaaatctcccatttgacaaaacaaccatcatggcagcattcactgggaatgcagagggaagaacatctgacatgagggcagaaatcataaggatgatggagaatgcaagaccagaagaagtgtccttccaggggcggggtgtcttcgagctctcggacgaaagggcagcgaacccgatcgtgccctcctttgacatgagtaatgaaggatcttatttcttcggagacaatgcagaggagtacgacaattaannnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/WSN/19334" spec="Sequence" taxon="A/WSN/1933" totalcount="4" value="agcaaaagcagggtagataatcactcacagagtgacatcgaaatcatggcgaccaaaggcaccaaacgatcttacgaacagatggagactgatggagaacgccagaatgccactgaaatcagagcatctgtcggaaaaatgattgatggaattggacgattctacatccaaatgtgcaccgaacttaaactcagtgattatgagggacggctgattcagaacagcttaacaatagagagaatggtgctctctgcttttgacgagaggaggaataaatatctagaagaacatcccagtgcggggaaagatcctaagaaaactggaggacctatatacaggagagtagatggaaagtggaggagagaactcatcctttatgacaaagaagaaataagacgaatctggcgccaagctaataatggtgacgatgcaacggctggtctgactcacatgatgatctggcactccaatttgaatgatgcaacttaccagaggacaagagctcttgttcgcacaggaatggatcccaggatgtgctcactgatgcagggttcaaccctccctaggaggtctggggccgcaggtgctgcagtcaaaggagttggaacaatggtgatggaattgatcagaatgatcaaacgtgggatcaatgatcggaacttctggaggggtgagaatggacggagaacaaggattgcttatgaaagaatgtgcaacattctcaaagggaaatttcaaacagctgcacaaagaacaatggtggatcaagtgagagagagccggaatccaggaaatgctgagttcgaagatctcatctttttagcacggtctgcactcatattgagagggtcagttgctcacaagtcctgcctgcctgcctgtgtgtatggatctgccgtagccagtggatacgactttgaaagagagggatactctctagtcggaatagaccctttcagactgcttcaaaacagccaagtatacagcctaatcagaccaaatgagaatccagcacacaagagtcaactggtgtggatggcatgccattctgctgcatttgaagatctaagagtatcaagcttcatcagagggacgaaagtggtcccaagagggaagctttccactagaggagttcaaattgcttccaatgaaaacatggagactatggaatcaagtacccttgaactgagaagcagatactgggccataaggaccagaagtggagggaacaccaatcaacagagggcttcctcgggccaaatcagcatacaacctacgttctcagtacagagaaatctcccttttgacagaccaaccattatggcagcattcactgggaatacagaggggagaacatctgacatgagaaccgaaatcataaggctgatggaaagtgcaagaccagaagatgtgtctttccaggggcggggagtcttcgagctctcggacgaaaaggcaacgagcccgatcgtgccctcctttgacatgagtaatgaaggatcttatttcttcggagacaatgcagaggagtacgacaattaaagaaaaatacccttgtttctact"/> <sequence id="seq_A/Wilson-Smith/19334" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" value="nnnnnnnnnnnnntagataatcactcacagagtgacatcgaaatcatggcgaccaaaggcaccaaacgatcttacgaacagatggagactgatggagaacgccagaatgccactgaaatcagagcatctgtcggaaaaatgattggtggaattggacgattctacatccaaatgtgcaccgaacttaaactcagtgattatgagggacggctgattcagaacagcttaacaatagagagaatggtgctctctgcttttgacgagaggaggaataaatatctagaagaacatcccagtgcggggaaagatcctaagaaaactggaggacctatatacaggagagtagatggaaagtggatgagagaactcatcctttatgacaaagaagaaataagacgaatctggcgccaagctaataatggtgacgatgcaacggctggtctgactcacatgatgatctggcactccaatttgaatgatgcaacttaccagaggacaagagctcttgttcgcacaggaatggatcccaggatgtgctcactgatgcagggttcaaccctccctaggaggtctggggccgcaggtgctgcagtcaaaggagttggaacaatggtgatggaattgatcagaatgatcaaacgtgggatcaatgatcggaacttctggaggggtgagaatggacggagaacaaggattgcttatgaaagaatgtgcaacattctcaaagggaaatttcaaacagctgcacaaagagcaatggtggatcaagtgagagagagccggaatccaggaaatgctgagttcgaagatctcatctttctagcacggtctgcactcatattgagagggtcagttgctcacaagtcctgcctgcctgcctgtgtgtatggacctgccgtagccagtggatacgactttgaaagagagggatactctctagtcggaatagaccctttcagactgcttcaaaacagccaagtatacagcctaatcagaccaaatgagaatccagcacacaagagtcaactggtgtggatggcatgccattctgctgcatttgaagatctaagagtatcaagcttcatcagagggacgaaagtggtcccaagagggaagctttccactagaggagttcaaattgcttccaatgaaaacatggagactatggaatcaagtacccttgaactgagaagcagatactgggccataaggaccagaagtggagggaacaccaatcaacagagggcttcctcgggccaaatcagcatacaacctacgttctcagtacagagaaatctcccttttgacagaccaaccattatggcagcattcactgggaatacagaggggagaacatctgacatgagaaccgaaatcataaggctgatggaaagtgcaagaccagaagatgtgtctttccaggggcggggagtcttcgagctctcggacgaaaaggcagcgagcccgatcgtgccctcctttgacatgagtaatgaaggatcttatttcttcggagacaatgcagaggagtacgacaattaaagaaaaatnnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/Ohio/23/19354" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" value="nnnnnnnnnnnnntagataatcactcactgagtgacatcgaaatcatggcgtctcaaggcaccaaacgatcatacgaacaaatggaaactggtggggaacgccagaatgccacggaaatcagggcatctgtaggaagaatgattggtggaattggacgattctacatccaaatgtgcaccgaactcaaactcagtgattatgagggacgactgattcaaaatagcataacaatagagagaatggtgctctctgcttttgacgagaggaggaataaatacctggaagaacatcccagcgctgggaaagaccctaagaaaactggaggacccatatataggaaaatagacggaaagtggatgagagaactcatcctttatgacaaagaagaaataaggagaatctggcgccaagccaacaatggtgaggatgcaacagccggtctgactcacattatgatttggcattccaatttgaatgatgccacttatcagaggacaagagctcttgttcgcaccggaatggaccccaggatgtgctctctgatgcagggttcaactctccccagaaggtctggagccgcaggtgctgcagtcaaaggagttgggacaatggtgatggagttgatcagaatgatcaaacgtggaatcaatgaccggaacttctggaggggtgaaaatggacgaaggacaagaattgcctatgaaagaatgtgcaacatccttaaaggaaaatttcaaacagctgcacagagagcaatgatggatcaagtgagagaaagtcgaaatccaggaaatgctgaaattgaagatctcatctttctggcacggtccgcactcatattaagaggatcagttgcacacaagtcttgtctgcctacctgtgtgtatggacttgctgtagcaagtggacatgactttgaaagagaagggtactctctggtcggaatagaccctttccgactgcttcaaaacagccaaatattcagcctaatcagaccaaatgaaaacccagctcacaagagtcaactggtgtggatggcatgccattctgccgcatttgaagatttaagagtatcaagcttcataagaggaaaaagagtggttccaagagggcagctttccaccagaggagttcagattgcttccaatgagaacatggagactatggactctagtactcttgaattgagaagcagatactgggccataaggaccagaagtggaggaaacactaatcaacagagagcatccgcgggccagatcagcgtgcaacctacattctcggtgcaaagaaatctcccttttgagagagcaaccgttatggcagcattcattgggaacacagagggaagaacatcagacatgagaaccgaaatcataaggatgatggaaagtgcaaaaccagaagatgtgtctttccaggggcggggagtcttcgagctctcggacgaaaaggcaacgagcccgatcgtgccttcctttgacatgagtaacgaaggatcttatttcttcggagacaatgcagaggagtatgacaattaaagannnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/USA/1976/19314" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatggcgtctcaaggcaccaaacgatcatatgaacaaatggaaactggtggagaacgccagaataccacggaaatcagagcatctgtcggaagaatgattggtggaattggaagattctacatccaaatgtgcaccgaactcaaactcgatgattatgagggacggctgattcagaacagcataacaatagagagaatggtgctctctgcttttgacgagaggaggaacaaatatctggaagaacatccaagcgctgggaaagaccctaagaaaactggagggcccctatacaggagaatagacggaaagtggataagagaactcatcctttatgacaaagaagaaataaggagaatctggcgccaagccaacaatggtgaggatgcaacagccggtctgactcacatgatgatctggcattccaatttgaatgatgccacttatcagaggacaagagctcttgttcgcaccggaatggatcccaggatgtgctctctgatgcagggttcaactctccccaggaggtctggagccgcaggtgctgcagtcaaaggagttgggacaatggtgatggagctgatcagaatgatcaaacgtggaatcaatgatcggaacttctggaggggtgaaaatggacgaaggacaagaattgcctatgaaagaatgtgcaacattctcaaaggaaaatttcaaacagctgcacagagagcaatgatggatcaagtgagagagagccgaaacccaggaaatgctgaaatcgaagatctcatctttctggcacggtccgcactcatattacgaggatcagttgcacacaagtcctgtctgcctgcctgtgtgtatggacttgctgtagccagtggacatgactttgaaagagaggggtactctctggtcggaatagaccctttcagactgcttcaaaacagccaagtattcagcctaatcagaccaaatgaaaacccagcgcacaagagtcaactagtgtggatggcatgccattctgctgcatttgaagatttaagggtatcaagcttcataagagggaaaagagtggttccaagagggcaactttccaccagaggggttcagattgcttccaatgagaacatggagactatggactctagtactcttgaactgagaagcagatactgggccataaggaccagaagtggaggaaacactaatcaacagagggcatctgcgggccaaatcagcgtgcaacctacattctcggtgcagagaaatctcccttttgagagagcaaccgttatggcagcattcactgggaacacagagggaagaacatcagacatgagaaccgaaatcataaggataatggaaagtgcaagaccagaagatgtgtctttccaggggcggggagtcttcgagctctcggacgaaaaggcaacgagcccgatcgtgccttcctttgacatgagtaacgaaggatcttatttcttcggagacagtgcagaggagtatgacaattaaagannnnnnnnnnnnnnnnnnnn"/> </data> <data id="alignedSegment7" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/19186" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnatgagtcttttaaccgaggtcgaaacgtacgttctctctatcgtcccgtcaggccccctcaaagccgagatcgcgcagagacttgaagatgtctttgcagggaagaacaccgatcttgaggctctcatggaatggctaaagacaagaccaatcctgtcacctctgactaaggggattttaggatttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgctttgtccaaaatgcccttaatgggaacggggatccaaataacatggacagagcagttaaactgtacaggaagcttaagagggagataacattccatggggccaaagaagtagcactcagttattccgctggtgcacttgccagttgtatgggcctcatatacaacaggatggggactgtgaccactgaagtggcatttggcctggtatgcgcaacctgtgaacagattgctgattcccagcatcggtctcacaggcaaatggtgacaacaaccaatccactaatcagacatgagaacagaatggtactggccagcactacggctaaggctatggagcaaatggctggatcgagtgagcaagcagcagaggccatggaggttgctagtcaggctaggcaaatggtgcaggcgatgagaaccattgggactcatcctagctccagtgctggtctgaaagacgatcttattgaaaatttgcaggcctaccagaaacgaatgggggtgcagatgcaacgattcaagtgatcctctcgttattgccgcaagtatcattgggatcttgcacttgatattgtggattcttgatcgtctttttttcaaatgcatttatcgtcgccttaaatacggtttgaaaagagggccttctacggaaggagtgccggagtctatgagggaagaatatcgaaaggaacagcagagtgctgtggatgttgacgatggtcattttgtcaacatagagctggagtaannnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/Hickox/19406" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnngatgagtcttctaaccgaggtcgaaacgtacgttctctctatcgtcccgtcaggccccctcaaagccgagatcgcacagagacttgaagatgtatttgctgggaagaacaccgaccttgaggctctcatggaatggctaaagacaagaccaatcctgtcacctctgactaaggggattttagggtttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgctttgtccaaaatgcccttaatgggaatggagatccaaataacatggacagagcagttaaactgtataggaagcttaagagggagataacattccatggggccaaagaaatagcactcagttattctgctggtgcacttgccagttgtatgggccttatatacaacaggatgggggctgtgaccactgaagtggcatttggcctggtatgcgcaacctgtgaacagattgccgactcccagcatcggtctcataggcaaatggtgacaacaaccaatccactaataagacatgagaacagaatggttctagccagcactacagctaaggctatggagcaaatggctggatcgagtgagcaagcagcagaggccatggaggttgctagtcaggctaggcaaatggtgcaggcgatgagagccattggaactcatcctagctccagtgctggtctgaaaaatgatcttcttgaaaatttgcaggcctatcagaaacgaatgggagtgcagatgcaacgattcaagtgatcctctcgttgttgccgcaagtatcattgggatcttgcacttgatattgtggattcttgatcgtctttttttcaaatgcatttatcgtctctttaaacacggtctaaaaagagggccttctacggaaggagtgccaaagtctatgagggaagaatatcgaaaggaacagcagagtgctgtggatgctgacgatagtcattttgtcaacatagagctggagtaannnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/WSN/19336" spec="Sequence" taxon="A/WSN/1933" totalcount="4" value="agcaaaagcaggtagatattgaaagatgagtcttctaaccgaggtcgaaacgtacgttctctctatcgtcccgtcaggccccctcaaagccgagatcgcacagagacttgaagatgtctttgcagggaagaacaccgatcttgaggttctcatggaatggctaaagacaagaccaatcctgtcacctctgactaaggggattttaggatttgtgttcacgctcaccgtgcccagtgagcggggactgcagcgtagacgctttgtccaaaatgctcttaatgggaacggagatccaaataacatggacaaagcagttaaactgtataggaagcttaagagggagataacattccatggggccaaagaaatagcactcagttattctgctggtgcacttgccagttgtatgggcctcatatacaacaggatgggggctgtgaccactgaagtggcatttggcctggtatgcgcaacctgtgaacagattgctgactcccagcatcggtctcataggcaaatggtgacaacaaccaatccactaatcagacatgagaacagaatggttctagccagcactacagctaaggctatggagcaaatggctggatcgagtgagcaagcagcagaggccatggatattgctagtcaggccaggcaaatggtgcaggcgatgagaaccgttgggactcatcctagctccagtgctggtctaaaagatgatcttcttgaaaatttgcaggcctatcagaaacgaatgggggtgcagatgcaacgattcaagtgatcctctcgtcattgcagcaaatatcattggaatcttgcacttgatattgtggattcttgatcgtctttttttcaaatgcatttatcgtcgctttaaatacggtttgaaaagagggccttctacggaaggagtgccagagtctatgagggaagaatatcgaaaggaacagcagaatgctgtggatgttgacgatggtcattttgtcaacatagagctggagtaaaaaactaccttgtttctact"/> <sequence id="seq_A/Wilson-Smith/19336" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" value="nnnnnnnnnnngtagatattgaaagatgagtcttctaaccgaggtcgaaacgtacgttctctctatcgtcccgtcaggccccctcaaagccgagatcgcacagagacttgaagatgtctttgcagggaagaacaccgatcttgaggctctcatggaatggctaaagacaagaccaatcctgtcacctctgactaaggggattttaggatttgtgttcacgctcaccgtgcccagtgagcggggactgcagcgtagacgctttgtccaaaatgctcttaatgggaacggagatccaaataacatggacaaagcagttaaactgtataggaagcttaagagggagataacattccatggggccaaagaaatagcactcagttattctgctggtgcacttgccagttgtatgggcctcatatacaacaggatgggggctgtgaccactgaagtggcatttggcctggtatgcgcaacctgtgaacagattgctgactcccagcatcggtctcataggcaaatggtgacaacaaccaatccactaatcagacatgagaacagaatggttctagccagcactacagctaaggctatggagcaaatggctggatcgagtgagcaagcagcagaggccatggatattgctagtcaggccaggcaaatggtgcaggcgatgagaaccattgggactcatcctagctccagtgctggtctaaaagatgatcttcttgaaaatttgcaggcctatcagaaacgaatgggggtgcagatgcaacgattcaagtgatcctctcgttattgcagcaaatatcattgggatcttgcacttgatattgtggattcttgatcgtctttttttcaaatgcatttatcgtcgctttaaatacggtttgaaaagagggccttctacggaaggagtgccagagtctatgagggaagaatatcgaaaggaacagcagaatgctgtggatgttgacgatggtcattttgtcaacatagagctggagtaaaaaannnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/Ohio/23/19356" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" value="nnnnnnnnnnnntagatgtttaaagatgagccttctaaccgaggtcgaaacgtacgttctctctatcgtcccatcaggccccctcaaagccgagatcgcacagagacttgaagatgtttttgcagggaagaacaccgatcttgaggctctcatggaatggctaaagacaagaccaatcctgtcacctctgactaagggaattttaggatttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgctttgtccaaaatgcccttaacgggaacggtgacccaaataacatggacaaagcagttaaactgtacaggaaacttaagagggagataacattccacggggccaaagaagtagcgctcagttattctgctggtgcacttgccagttgtatgggcctcatatacaacagaatggggactgttaccactgaagtggcatttggcctagtatgcgcaacctgcgaacagattgctgattcccagcatcggtctcacagacaaatggtgacaacaaccaatccactaatcagacatgagaacagaatggtactagccagcaccacggctaaagctatggagcaaatggctggatcgagtgagcaagcggcagaggccatggaggttgctagccaggctaggcaaatggtacaggcgatgagaacaattgggactcaccctagctccagtgctggtctgaaagatgatcttcttgaaaatttgcaggcctaccagaaacgaatgggggtgcagatgcaacgattcaagtgaccctctcgttgctgccgcaagcatcattggaatcttgcacttgatattgtggattcttgatcgtctttttttcaaatgcatttatcgtcgccttgaatacggtttgaaaagagggccttctacggaaggagtgccggagtctatgagggaagaatatcggcagaaacagcagagtgctgtggatgttgacgatggtcattttgtcaacatagagctggagtaannnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/USA/1976/19316" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnatgagccttctaaccgaggtcgaaacgtacgttctctctatcgtcccatcaggccccctcaaagccgagatcgcgcagagacttgaagatgtttttgcagggaaaaacaccgatcttgaggctctcatggaatggctaaagacaagaccaatcctgtcacctctgactaagggaattttaggatttgtgttcacgctcaccgtgcccagtgagcgaggactgcagcgtagacgctttgtccaaaatgcccttaacgggaacggtgacccaaataacatggacaaagcagttaaactgtacaggaaacttaagagggagataacattccacggggccaaagaagtagcgctcagttattctgctggtgcacttgccagttgtatgggcctcatatacaacagaatggggactgttaccactgaagtggcatttggcctagtatgcgcaacctgcgaacagattgctgattcccagcatcggtctcacaggcaaatggtgacaacaaccaatccattaatcagacatgagaacagaatggtactagccagcactacggctaaagctatggagcaaatggctggatcgagtgagcaagcagcagaggccatggaggttgctagccaggctaggcaaatgatacaggcgatgagaacaattgggacccaccctagctccagtgctggtctgaaagatgatcttcttgaaaatttgcaggcctaccagaaacgaatgggggtgcagatgcaacgattcaagtgaccctctcgttgctgccgcaagcatcattgggatcttgcacttgatattgtggattcttgatcgtctttttttcaaatgcatttatcgtcgccttaaatacggtttgaaaagagggccttctacggaaggagtgccggagtccatgagggaagaatatcggcagaaacagcagagtgctgtggatgttgacgatggtcattttgtcaacatagagctggagtaannnnnnnnnnnnnnnnnnnn"/> </data> <data id="alignedSegment3" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/19182" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnatggaagactttgtgcgacaatgcttcaatccgatgattgtcgagcttgcggaaaaagcaatgaaagagtatggagaggacctgaaaatcgaaacaaacaaatttgcagcaatatgcactcacttggaagtatgcttcatgtattcagattttcacttcatcaatgagcgaggcgaatcaataatcgtagaatctggcgatccaaatgcactcttgaagcacagatttgaaataatcgagggaagagatcgcacaatggcctggacggtggtaaacagtatttgcaacactacaggggctgagaaaccaaagtttctcccagatctgtatgattacaaggagaatagattcattgagattggagtaacaaggagagaagtccacatatactatctggaaaaggccaataaaataaaatctgagaagacacacatccacattttctcgttcactggggaagaaatggccacaaaggccgactacactctcgatgaggagagcagggctaggatcaaaaccagactattcaccataagacaagagatggccagcagaggcctctgggattcctttcgtcagtccgagagaggcgaagagacaattgaagaaagatttgaaatcacaggaacaatgcgcaggcttgccgaccaaagtctcccaccgaacttctccagccttgaaaactttagagcctatgtggatggattcgaaccgaacggctacattgagggcaagctttctcaaatgtccaaagaagtaaatgctagaattgaaccttttttgaagacaacaccacgcccacttaggctgccagatgggcctccctgttctcagcggtccaaattcctgctgatggatgccttgaaattaagcattgaggacccaagccatgaaggagaggggataccgctatatgatgcgatcaagtgcatgagaacattctttgggtggaaggaacccaatgttgttaagccacacgaaaagggaataaatccaaattatctcttggcatggaagcaagtactggcagaactgcaggatattgagaatgaggagaaaattccaaagactaaaaatatgaagaaaacgagccagttaaagtgggcacttggtgagaatatggcaccagaaaaagtggattttgacgactgtaaagatgtaagcgatctgaagcaatatgatagtgatgaaccggaattgaggtcgcttgcaagttggattcagagtgagttcaacaaggcatgcgaactgaccgattcaagctggatagagctcgatgagattggagaagatgtggctccaattgaacacattgcaagcatgagaaggaattatttcacagcagaggtgtctcattgcagagccacagaatacataatgaagggggtatacatcaatactgccttgcttaatgcatcctgtgcagcaatggatgatttccaattaattccaatgataagcaagtgtagaactaaggagggaagacgaaagaccaatttgtacgggttcatcataaaaggaagatcccacttaaggaatgacaccgacgtggtaaattttgtgagcatggagttttccctcactgatccaagacttgaaccgcacaaatgggagaagtactgtgtccttgagataggggatatgcttctaagaagtgccataggccaagtgtcaaggcccatgttcttgtatgtgaggacaaatgggacatcaaaaattaaaatgaaatggggaatggaaatgagacgttgcctccttcagtcacttcaacaaatcgagagtatgattgaagctgagtcctctgtcaaggagaaagacatgaccaaagaattctttgagaacaaatcagaaacatggcccattggagagtcccccaaaggagtggaggaaggttccattgggaaggtctgcaggactttgttggcaaaatcggtattcaacagcttgtatgcatctccacaactagaaggattctcagctgaatcaagaaaactgcttcttatcgttcaggctcttagggacaacctggaacctggaacctttgatcttggggggctatatgaagcaattgaggagtgcctgattaatgatccctgggttttgcttaatgcgtcttggttcaactccttcctcacacatgcactgagatagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/Hickox/19402" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" value="nnnnnnnnnnnnnnntgatccgaaatggaagattttgtgcgacaatgcttcaatccgatgattgtcgagcttgcggaaaaggcaatgaaagagtatggagaggacccgaaaatcgaaacaaacaaacttgcagcaatatgcactcacttggaagtgtgcttcatgtattcagattttcacttcatcaatgagcaaggcgaatcaataatagtagaacttggtgatccaaacgcacttctgaagcacagatttgaaataatcgagggaagagatcgcacaatggcctggacagtggtaaacagtatttgcaacactacaggggctgagaaaccgaagtttctgccagatttgtatgattacaaggagaatagattcatcgaaattggagtgacaaggagggaagttcacatttactatctggaaaaggccaataaaattaaatctgagaagacacacatccacattttctcgttcactggggaagaaatggccacaaaggccgactacactctcgatgaggaaagcagagctagaatcaaaaccagactattcaccataagacaagaaatggctagcagaggcctttgggattcctttcgtcagtccgagagaggcgaagagacaattgaagaaaaatttgaaatcacaggaacaatgcgcaagctcgccgaccaaagtctcccgccgaacttctcctgccttgagaattttagagcctatgtggatggattcgaaccgaacggctacattgagggcaagctttctcaaatgtccaaagaagtgaatgctagaattgaacctttttttaagacaacaccacgaccaattagacttccggatgggcctccttgttctcagcggtccaaattcctgctgatggatgctttaaaattaagcattgaggacccaagtcatgaaggagagggaataccactatatgatgcgatcaagtgcatgaggacattctttggatggaaagaaccctatgttgttaaaccacacgaaaagggaataaatccaaattatctgctgtcatggaagcaagtactggcagaactgcaggacattgaaaatgaggagaagattccaaagactaaaaacatgaagaaaacgagtcagctaaagtgggcacttggtgagaacatggcaccagaaaaggtagactttgacgactgtaaagatgtaagcgatttgaagcaatattatagtgatgaaccagaattgaggtcactttcaagttggatccagaatgagttcaacaaggcctgcgagctgaccgattcagtctggatagagcttgatgaaattggagaagatgtggctccaattgaacacattgcaagcatgagaaggaattacttcacagcagaggtgtctcattgcagagccacagaatacataatgaagggggtatacattaatactgccttgcttaatgcatcctgtgcagcaatggatgatttccaattaattcccatgataagcaaatgtagaactaaagagggaaggcgaaagaccaatttgtatggtttcatcataaaaggaaggtctcacttaaggaatgacaccgacgtggtaaactttgtgagcatggaattttctctcactgacccaagacttgagccacacaaatgggagaagtactgtgttcttgagataggagatatgcttctaagaagtgccataggccaggtgtcaaggcccatgttcttatatgtgaggacaaatggaacctcaaaaattaaaatgaaatggggaatggagatgaggcgttgcctccttcagtcacttcaacaaattgagagcatgattgaagccgagtcctctgtcaaggagaaagacatgaccaaagagttttttgagaataaatcagaaacatggcccattggagagtcccccaaaggggtggaagaaggttccattgggaaggtatgcaggactttattggcaaagtcggtattcaatagcttgtatgcatctccacaactagaaggattttcagctgaatcaagaaaactgctccttattgttcaggctcttagggacaacctggaacctgggacctttgatcttggggggctatatgaagcagttgaggagtgcctgattaatgatccctgggttttgcttaatgcttcttggttcaactccttcctcacacatgcattaagatagttgtggcaatgctactnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/WSN/19332" spec="Sequence" taxon="A/WSN/1933" totalcount="4" value="agcgaaagcaggtactgattcaaaatggaagattttgtgcgacaatgcttcaatccgatgattgtcgagcttgcggaaaaggcaatgaaagagtatggagaggacctgaaaatcgaaacaaacaaatttgcagcaatatgcactcacttggaagtgtgcttcatgtattcagattttcacttcatcgatgagcaaggcgagtcaatagtcgtagaacttggcgatccaaatgcacttttgaagcacagatttgaaataatcgagggaagagatcgcacaatagcctggacagtaataaacagtatttgcaacactacaggggctgagaaaccaaagtttctaccagatttgtatgattacaagaagaatagattcatcgaaattggagtaacaaggagagaagttcacatatactatctggaaaaggccaataaaattaaatctgagaagacacacatccacattttctcattcactggggaggaaatggccacaaaggccgactacactctcgatgaagaaagcagggctaggatcaaaaccaggctattcaccataagacaagaaatggctagcagaggcctctgggattcctttcgtcagtccgagagaggcgaagagacaattgaagaaagatttgaaatcacaggaacaatgcgcaagcttgccgaccaaagtctcccgccaaacttctccagccttgaaaaatttagagcctatgtggatggattcgaaccgaacggctacattgagggcaagctttctcaaatgtccaaagaagtaaatgctagaattgaaccttttttgaaatcaacaccacgaccacttagacttccggatgggcctccctgttctcagcggtccaaattcctgctgatggatgccttaaaattaagcattgaggacccaagtcatgagggagaggggataccgctatatgatgcaatcaaatgcatgagaacattctttggatggaaggaacccaatgttgttaaaccacacgaaaagggaataaatccaaattatcttctgtcatggaagcaagtactggcagaactgcaggacattgagaatgaggagaaaattccaaggactaaaaatatgaagaaaacgagtcagttaaagtgggcacttggtgagaacatggcaccagaaaaggtagactttgacgattgtaaagatgtaggcgatttgaagcaatatgatagtgatgaaccagaattgaggtcgcttgcaagttggattcagaatgagttcaacaaggcatgtgaactgaccgattcaagctggatagagctcgatgagattggagaagatgcggctccaattgaacacattgcaagcatgagaaggaattatttcacagcagaggtgtctcattgcagagccacagaatacataatgaagggggtgtacatcaatactgccttgcttaatgcatcctgtgcagcaatggatgatttccaattaattccaatgataagcaagtgtagaactaaggagggaaggcgaaagaccaatttgtacggtttcatcataaaaggaagatcccacttaaggaatgacaccgatgtggtaaactttgtgagcatggagttttccctcactgacccaagacttgaaccacacaaatgggagaagtactgtgttcttgaggtaggagatatgcttctaagaagtgccataggccatgtgtcaaggcctatgttcttgtatgtgaggacaaatggaacctcaaaaattaaaatgaaatgggggatggaaatgaggcgttgcctccttcagtcacttcaacaaatcgagagtatgattgaagctgagtcctctgtcaaggagaaagacatgaccaaagagttctttgaaaacaaatcagaaacatggcccgttggagagtcccccaaaggagtggaggaaggttccattgggaaggtctgcagaactttattggcaaagtcggtattcaacagcttgtatgcatctccacaactagaaggattttcagctgaatcaagaaaactgcttcttatcgttcaggctcttagggacaacctggaacctgggacctttgatcttggggggctatatgaagcaattgaggagtgcctgattaatgatccctgggttttgcttaatgcttcttggttcaactccttcctcacacatgcattgagatagttgtggcaatgctactatttgctatccatactgtccaaaaaagtaccttgtttctact"/> <sequence id="seq_A/Wilson-Smith/19332" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" value="nnnnnnnnnnngtactgattcaaaatggaagattttgtgcgacaatgcttcaatccgatgattgtcgagcttgcggaaaaggcaatgaaagagtatggagaggacctgaaaatcgaaacaaacaaatttgcagcaatatgcactcacttggaagtgtgcttcatgtattcagattttcacttcatcgatgagcaaggcgagtcaataatcgtagaacttggcgatccaaatgcacttttgaagcacagatttgaaataatcgagggaagagatcgcacaatggcctggacagtaataaacagtatttgcaacactacaggggctgagaaaccaaagtttctaccagatttgtatgattacaaggagaatagattcatcgaaattggagtaacaaggagagaagttcacatatactatctggaaaaggccaataaaattaaatctgagaagacacacatccacattttctcattcactggggaggaaatggccacaaaggccgactacactctcgatgaagaaagcagggctaggatcaaaaccaggctattcaccataagacaagaaatggctagcagaggcctctgggattcctttcgtcagtccgagagaggcgaagagacaattgaagaaagatttgaaatcacaggaacaatgcgcaagcttgccgaccaaagtctcccgccgaacttctccagccttgaaaattttagagcctatgtggatggattcgaaccgaacggctacattgagggcaagctttctcaaatgtccaaagaagtaaatgctagaattgaaccttttttgaaatcaacaccacgaccacttagacttccggatgggcctccctgttctcagcggtccaaattcctgctgatggatgccttaaaattaagcattgaggacccaagtcatgagggagaggggataccgctatatgatgcaatcaaatgcatgagaacattctttggatggaaggaacccaatgttgttaaaccacacgaaaagggaataaatccaaattatcttctgtcatggaagcaagtactggcagaactgcaggacattgagaatgaggagaaaattccaaggactaaaaatatgaagaaaacgagtcagttaaagtgggcacttggtgagaacatggcaccagaaaaggtagactttgacgactgtaaagatgtaggcgatttgaagcaatatgatagtgatgaaccagaattgaggtcgcttgcaagttggattcagaatgagttcaacaaggcatgtgaactgaccgattcaagctggatagagctcgatgagattggagaagatgtggctccaattgaacacattgcaagcatgagaaggaattatttcacagcagaggtgtctcattgcagagccacagaatacataatgaagggggtgtacatcaatactgccttgcttaatgcatcctgtgcagcaatggatgatttccaattaattccaatgataagcaagtgtagaactaaggagggaaggcgaaagaccaatttgtacggtttcatcataaaaggaagatcccacttaaggaatgacaccgacgtggtaaactttgtgagcatggagttttccctcactgacccaagacttgaaccacacaaatgggagaagtactgtgttcttgaggtaggagatatgcttctaagaagtgccataggccatgtgtcaaggcctatgttcttgtatgtgaggacaaatggaacctcaaaaattaaaatgaaatgggggatggaaatgaggcgttgcctccttcagtcacttcaacaaatcgagagtatgattgaagctgagtcctctgtcaaggagaaagacatgaccaaagagttctttgagaacaaatcagaaacatggcccgttggagagtcccccaaaggagtggaggaaggttccattgggaaggtctgcagaactttattggcaaagtcggtattcaacagcttgtatgcatctccacaactagaaggattttcagctgaatcaagaaaactgcttcttatcgttcaggctcttagggacaacctggaacctgggacctttgatcttggggggctatatgaagcaattgaggagtgcctgattaatgatccctgggttttgcttaatgcttcttggttcaactccttcctcacacatgcattgagatagttgtggcaatgctactatttgctatccatactgtccaaaaaannnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/Ohio/23/19352" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" value="nnnnnnnnnnnnnnnnnatccaaaatggaagactttgtgcgacaatgcttcaatccgatgattgtcgagcttgcggaaaagacaatgaaagaatatggagaggacccgaaaatcgaaacaaacaaatttgcagcaatatgcactcacatggaagtatgcttcatgtattcagatttccacttcatcaatgaacggggcgaatcaataatcgtagaatctggcgatccaaatgcactcttgaagcacagatttgaaataatcgaaggaagagatcggactatggcctggacggtggtgaacagtatttgtaacattacaggggttgggaaaccaaagtttctcccagatctgtatgactacaaggaagatagattcattgagattggtgtaacaaggagagaagtccatatatactacctggaaaaggccaataaaataaaatctgaagagacacacatccacattttctcattcacgggagaagaaatggccacaaaggccgactacactctcgatgaagaaagtagggctagaataaaaaccaggctattcaccataagacaagagatggctagcagaggcctctgggattcctttcgtcagtccgagagaggcgaagagacaattgaagaaagatttgagatcacaggaacaatgcgcaggcttgctgaccaaagtctcccaccgaacttctccagtcttaaaaactttagagcctatgtggatggattcgagccgaacggctacattgagggcaagctttctcaaatgtccaaagaagtaaatgctagaattgagccttttttgaagacaacaccacgcccacttaggctgccatgtgggcctccctgttttcagcgatccaaattcctgttgatggatgccctgaagttaagcattgaagacccaagccatgaaggagaggggataccgctatatgatgcgatcaagtgcatgaaaacgttctttgggtggaaggaacccattattgttaagccacacgaaaaaggaataaattcaaattaccttttggcatggaagcaagtactggcagagctacaggatatcgaggatgagaaaaaagttccaaggactaagaacatgaagaaaacaagccagttaaagtgggcacttggtgagaatatggcaccagaaaaggtggactttgacgactgtaaggatgtaagcgatctgaagcaatatgatagtgatgaaccagaatttaggtcgcttgcaagttggattcaaagtgagttcaacaaagcatgtgaactgactgattcaagctggatagaactcgatgagattggagaagatgtggctccgattgagcacattgcaagcatgagaaggaattatttcacagcagaggtgtctcattgcagagccacagaatacataatgaagggagtatacatcaatactgctttgcttaatgcatcctgtgcagcaatggatgatttccaattgattccaatgataagcaaatgtagaactaaagagggaagacgaaagaccaatttgtacggattcatcataaaaggaagatcccacttaaggaatgacaccgacgtggtaaattttgtgagcatggagttttccctcactgatccaagacttgaaccgcacaaatgggagaagtactgtatccttgagataggagacatgcttctaagaactgccataggtcaagtgtcaaggcctatgttcctatatgtgaggacaaatgggacctcaaaaattaaaatgaaatggggaatggaaatgagacgttgcctccttcagtccctccagcagattgagagtatgattgaagctgagtcctctgtcaaggagaaagacatgaccaaagaattctttgagaacaaatcagaaacatggcccattggagagtcccccaaaggagtggaagaaggttccattgggaaggtctgtaggacattgttggcaaagtcggttttcaacagtttgtatgcatctccacaattagaaggattctcagctgaatcaagaaaattgcttctcatcgttcaggctcttagggacaatcttgaacctggaacttttgatcttggggggctatatgaatcaattgaggagtgcctgattaatgatccctgggttttgcttaatgcatcttggttcaactccttcctcacacatgcactgagatagttgtggcattgctactatttgctatccatactgtccannnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/USA/1976/19312" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" 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</data> <data id="alignedSegment2" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/19181" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" 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<sequence id="seq_A/Hickox/19401" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" 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<sequence id="seq_A/Wilson-Smith/19331" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" 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<sequence id="seq_A/swine/Ohio/23/19351" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" 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<sequence id="seq_A/swine/USA/1976/19311" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" 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</data> <data id="alignedSegment6" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/19185" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" value="nnnnnnnnnnnnnnnnnnnatgaatccaaatcaaaaaataataaccattgggtcaatctgtatggtagtcggaataattagcctaatattgcaaatagggaatataatctcaatatgggttagccattcaattcaaactggaaatcaaaaccatcctgaaacatgcaaccaaagcatcattacctatgaaaataacacctgggtgaatcaaacatatgttaacattagcaatactaacgttgttgctggacaggatgcaacttcagtgatattaaccggcaattcctctctttgtcccatcagtgggtgggctatatacagcaaagacaatggcataagaattggttccaaaggagacgtttttgtcataagagagccatttatttcatgctctcacttggaatgcaggaccttttttctgactcaaggcgccttgctgaatgacaagcattcaaatgggaccgtcaaggacagaagcccctatagaaccttaatgagctgccctgttggtgaagctccgtctccgtacaattcaaggttcgaatcggttgcttggtcagcaagtgcatgccatgatggcatgggctggctaacaatcggaatttcaggtccagataatggagcagtggctgtattaaaatacaacggtataataacagacaccatcaaaagttggaggaacaacatattgagaacgcaagagtctgaatgtgcctgtgtaaatggttcatgttttactataatgaccgatggcccaagtaatgggcaggcctcgtacaaaattttaaagatagagaaggggaaggttactaaatcaattgagttgaatgcacctaattaccactacgaggaatgttcctgttaccctgatacaggtaaagtgatgtgtgtgtgcagagacaattggcatggttcgaatcgaccatgggtgtctttcgatcaaaacctggattatcaaatagggtacatctgcagtggggttttcggtgacaatccgcgtcccaatgatggaacaggcagctgtggtccagtgtcttctaatggagcaaatggaataaagggattttcatttaggtatgataatggtgtttggataggaagaactaaaagtaccagttccagaagcgggtttgagatgatttgggatcctaatggatggacagagactgatagtagtttctctgtgagacaagatattgtagcaataactgattggtcggggtacagcgggagtttcgttcaacatcctgagctaacagggctggactgcatgaggccttgcttctgggttgaattaatcaggggacaacctaaagagaatacaatctggactagtgggagcagcatttccttttgtggcgtaaatagtgatactgtaggttggtcttggccagacggtgctgagttgccattcagcattgacaagtagnnnnnnnnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/Hickox/19405" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" value="nnnnnnnnnnnnnnnnnnaatgaatccaaatcagaaaataataaccattggatcaatctgtatggtagtcggaataattagcctaatattgcaaatagggaatattgtctcaatatggattagccattcaattcaaactggaaatcaaaaccatactggaacttgcaaccaaagcatcattacctataaaaatagcacctgggtaaatcagacatatgtcaatattagcaacactaacgttgttgctgggaaggatacaacttcagtgatattagccggcaattcatctctttgccctatccgtgggtgggctatatacagcaaagataatggcgtaagaattggttccaaaggagatgtttttgtcataagagaaccctttatttcatgttctcacttggaatgcaggaccttttttctgacccaaggcgccctgttgaatgacaagcattcaaatgggaccgttaaggacagaagcccttatagggccttaatgagctgccctgttggtgaagctccgtccccgtacaattcaaggtttgaatcggttgcttggtcagcaagtgcatgtcatgatggcatgggctggctaacaatcggaatttctggtccagatgatggagcagtggctgtgttaaaatacaacggcataataactgaaaccataaaaagttggaggaaggaaatattgagaacacaagagtctgaatgtgtctgcgtaaatggttcatgtttcactataatgaccgacggcccgagtggtgggccggcctcgtacaaaattttcaagatcgagaaggggaaggttactaaatcaatagagttggatgcacctaattctcactacgaggaatgttcctgctaccctgataccagcaaggtgatgtgtgtgtgcagagacaattggcacggttcgaaccgaccatgggtgtctttcgatcaaaatctggattatcaaatgggatacatctgcagtggggttttcggtgacaatccgcgtcccaaagatggaaaaggcagctgtggtccagtgtatgttgatggagcaaacggagtaaagggattttcatacaggtatggtaatggtgtttggataggaaggactaaaagtaacagttccagacaggggtttgagatgatttgggatcctaatgggtggacagagactgatagtaatttctttatgaaacaagatgtagtggcagtaaccgattggtcagggtacagcggaagtttcgttcaacatcctgagctaacagggctggactgtatgaggccttgcttctgggttgaattaatcaggggacgacctaaagaaaatacaatctggaccagtgggagcagcatttctttttgtggtgtgaatagtgatactgtagattggtcttggccagacggtgccgagttgccattcaccattgacaagtagtttgttcaaaaaannnnnnnnnnnnnnn"/> <sequence id="seq_A/WSN/19335" spec="Sequence" taxon="A/WSN/1933" totalcount="4" value="agcgaaagcaggagtttaaatgaatccaaaccagaaaataataaccattgggtcaatctgtatggtagtcggaataattagcctaatattgcaaataggaaatataatctcaatatggattagccattcaattcaaaccggaaatcaaaaccatactggaatatgcaaccaaggcagcattacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaagttgttgctgggcaggactcaacttcagtgatattaaccggcaattcatctctttgtcccatccgtgggtgggctatacacagcaaagacaatggcataagaattggttccaaaggagacgtttttgtcataagagagccttttatttcatgttctcacttggaatgcaggaccttttttctgactcaaggcgccttactgaatgacaagcattcaagggggacctttaaggacagaagcccttatagggccttaatgagctgccctgtcggtgaagctccgtccccgtacaattcaaggtttgaatcggttgcttggtcagcaagtgcatgtcatgatggaatgggctggctaacaatcggaatttctggtccagatgatggagcagtggctgtattaaaatacaaccgcataataactgaaaccataaaaagttggaggaagaatatattgagaacacaagagtctgaatgtacctgtgtaaatggttcatgttttaccataatgaccgatggcccaagtgatgggctggcctcgtacaaaattttcaagatcgagaaggggaaggttactaaatcgatagagttgaatgcacctaattctcactacgaggaatgttcctgttaccctgataccggcaaagtgatgtgtgtgtgcagagacaattggcacggttcgaaccgaccatgggtgtccttcgaccaaaacctagattataaaataggatacatctgcagtggggttttcggtgacaacccgcgtcccaaagatggaacaggcagctgtggcccagtgtctgctgatggagcaaacggagtaaagggattttcatataagtatggcaatggtgtttggataggaaggactaaaagtgacagttccagacatgggtttgagatgatttgggatcctaatggatggacagagactgatagtaggttctctatgagacaagatgttgtggcaataactaatcggtcagggtacagcggaagtttcgttcaacatcctgagctaacagggctagactgtatgaggccttgcttctgggttgaattaatcagggggctacctgaggaggacgcaatctggactagtgggagcatcatttctttttgtggtgtgaatagtgatactgtagattggtcttggccagacggtgctgagttgccgttcaccattgacaagtagtttgttcaaaaaactccttgtttctact"/> <sequence id="seq_A/Wilson-Smith/19335" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" value="nnnnnnnnnnnnnntttaaatgaatccaaaccagaaaataataaccattgggtcaatctgtatggtagtcggaataattagcctaatattgcaaatagggaatataatctcaatatggattagccattcaattcaaaccggaaatcaaaaccatactggaatatgcaaccaaggcatcattacctannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaacgttgttgctgggcaggactcaacttcagtgatattaaccggcaattcatctctttgtcccatccgtgggtgggctatacacagcaaagacaatggcataagaattggttccaaaggagacgtttttgtcataagagagccttttatttcatgttctcacttggaatgcaggaccttttttctgactcaaggcgccttactgaatgacaagcattcaaatgggaccgttaaggacagaagcccttatagggccttaatgagctgccctgtcggtgaagctccgtccccgtacaattcaaggtttgaatcggttgcttggtcagcaagtgcatgtcatgatggcatgggctggctaacaatcggaatttctggtccagataatggagcagtggctgtattaaaatacaacggcataataactgaaaccataaaaagttggaggaagaaaatattgagaacacaagagtctgaatgtacctgtgtaaatggttcatgttttaccataatgaccgatggcccaagtaatgggctggcctcgtacaaaattttcaagatcgagaaggggaaggttactaaatcaatagagttgaatgcacctaattctcactacgaggaatgttcctgttaccctgataccggcaaagtgatgtgtgtgtgcagagacaattggcacggttcgaaccgaccatgggtgtccttcgaccaaaacctagattatcaaataggatacatctgcagtggggttttcggtgacaacccgcgtcccaaagatggaacaggcagctgtggcccagtgtctgctgatggagcaaacggagtaaagggattttcatataggtatggtaatggtgtttggataggaaggactaaaagtgacagttccagacatgggtttgagatgatttgggatcctaatggatggacagagactgatagtaggttctctgtgagacaagatgttgtggcaatgactgatcggtcagggtacagcggaagtttcgttcaacatcctgagctaacagggctagactgtatgaggccttgcttctgggttgaattaatcaggggacgacctgaggaggaaacaatctggactagtgggagcatcatttctttttgtggcgtgaatagtgatactgtagattggtcttggccagacggtgctgagttgccgttcaccattgacaagtagtctgttcaaaaaannnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/Ohio/23/19355" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" value="nnnnnnnnnnnnntttaaaatgaatacaaatcaaagaataataaccattgggtcaatctgtctaatagttggaataattagcctattattacagatagggaatataatctcattatggattagccattcaattcaaactagaggtcaaaaccatcctgaaatatgcaaccaaagcatcattacctatgaaaacaacacatgggtgaatcaaacatatgttaacattagcaatgctaacattgttgctggacaggatgcaacttcaatgatactagccggcaattcctctctttgccccatcagtgggtgggctatatacagcaaagacaatggcataagaattggttccaagggagacatttttgtcataagagagccgtttatttcatgctctcacttggaatgcagaaccttttttctgactcaaggcgctttgctgaatgacaagcattcaaatggaaccgtcaaggacagaagcccttatagaaccttaatgagctgccctattggtgaagctccgtccccgtacaattcaaggttcgaatcggttgcttggtcagcaagtgcatgccatgatggcatgagctggctaacaatcggaatttccggtccagataatggagcagtggctgtattaaaatacaatggtataataacagataccatcaaaagttggaggaacaaaatattgagaacgcaagagtctgagtgtgcctgtataaatggttcatgttttactataatgaccgatggcccaagtaatgggcaggcctcgtacaaaatcttcaagatagagaaggggagaattattaaatcaattgagttgaatgcacctaattaccactacgaggaatgctcctgttatcctgatacaagtaaagtaatgtgtgtgtgcagagacaactggcatggttcgaaccggccatgggtgtctttcgatcaaaatctggattatcaaatagggtacatctgcagtggggttttcggtgacaacccgcgttccaatgatggaacaggcagctgtggtccagtgccttctaatggagcaaatggagtaaaagggttttcgtttagatatggcaatggtgtttggataggaagaactaaaagtatcagttccagaagcggatttgagatgatttgggatcctaatgggtggacagagactgatagtagtttctctgtgaaacaagatattgtagcaacaactgattggtcaggatacagcggaagtttcgttcaacatcctgaactaacaggactggactgcataaggccttgcttctgggttgagttaatcagaggacaacctaaggagaacacaatctggactagtgggagcagcatttccttttgtggcgtgaatggtggtactgtagactggtcatggccagacggcgctgagttgccattcaccattgacaagtagtttgttcannnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/USA/1976/19315" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" value="nnnnnnnnnnnnnnnnnnnatgaatacaaatcaaaaaataataaccattgggtcaatctgtctaatagttggaataactagcctaatattacaaatagggaatataatctcaatatggattagccattcaattcaaactagagatcaaaaccatcctgaaacatgcaaccaaagcatcattacctatgaaaacaacacatgggtgaatcaaacatatgctaacattagcaatgctaacattattgctggaaaggatgcaacttcaatgatattagccggcaattcctctctttgccccatcagtgggtgggctatatacagcaaagacaatggcataagaattggttccaaaggagacatttttgtcataagagagccgtttatttcatgctctcacttggaatgcagaaccttttttctgactcaaggcgctttgctgaatgacaagcattcaaatggaaccgtcaaggacagaagcccttatagaaccttaatgagctgccctattggtgaagctccatctccgtacaattcaaggttcgaatcggttgcttggtcagcaagtgcatgccatgatggcatgagctggctaacaatcggaatttccggtccagataatggagcagtggctgtattaaaatacaatggtataataacagataccatcaaaagttggaggaacaaaatactgagaacgcaagagtctgaatgtgcctgtgtaaatggttcatgttttactataatgaccgatggcccaagtaatgggcaggcctcgtacaaaatcttcaagatagagaaggggaggattattaaatcaattgagttgaatgcacctaattaccactacgaggaatgctcctgttatcctgatgcaagtaaagtaatgtgtgtgtgcagagacaactggcatggttcgaaccgaccatgggtgtctttcgatcaaaatctggattatcaaatagggtacatctgcagtggggttttcggtgacaacccgcgttccaatgatggaacaggcagctgtggtccagtgtcttctaatggagcaaatggggtaaaaggattttcgtttagatatggcaatggtgtttggataggaagaactaaaagtatcagttccagaaacggatttgagatgatttgggatcctaatgggtggacagagactgatagtagtttctctgtgaaacaagatattgtagcaataactgattggtcagggtacagcgggagtttcgttcaacatcctgaactaacaggactggactgcataaggccttgcttctgggttgagttaatcagaggacaacctaaggagaacacaatctggactagtgggagcagcatttccttttgtggcgtgaatagtgatactgtaggctggtcttggccagacggcgctgagttgccattcaccattgacaagtagtttnnnnnnnnnnnnnnnnnnnnnnnnn"/> </data> <data id="alignedSegment8" spec="Alignment" name="alignment"> <sequence id="seq_A/Brevig_Mission/1/19187" spec="Sequence" taxon="A/Brevig_Mission/1/1918" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnnatggattccaacactgtgtcaagctttcaggtagactgctttctttggcatgtccgcaaacggtttgcagaccaagaactgggtgatgccccattccttgatcggcttcgccgagatcagaagtccctaagaggaagaggcagcactcttggtctggacatcgagacagccacccgtgctggaaagcagatagtggagcggattctgaaggaagaatccgatgaggcacttaaaatgaccattgcctctgtacctgcttcgcgctacctaactgacatgactcttgaggagatgtcaagggactggttcatgctcatgcccaagcagaaagtggcaggctctctttgtatcagaatggaccaggcgatcatggataagaacatcatactgaaagcgaacttcagtgtgattttcgaccggctggagactctaatactactaagggctttcaccgaagagggagcaattgttggcgaaatttcaccattgccttctcttccaggacatactgatgaggatgtcaaaaatgcagttggggtcctcatcggaggacttgaatggaatgataacacagttcgagtctctgaaactctacagagattcgcttggagaagcagtaatgagaatgggagacctccactccctccaaaacagaaacggaaaatggcgagaacaattaagtcagaagtttgaagaaataagatggttgattgaagaagtgagacatagactgaagataacagagaatagttttgagcaaataacatttatgcaagccttacaactattgcttgaagtggagcaagagataagaactttctcgtttcagcttatttaannnnnnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/Hickox/19407" spec="Sequence" taxon="A/Hickox/1940" totalcount="4" value="nnnnnnnnnnnnnnnnnnnagacataatggatcccaacactgtgtcaagctttcaggtagattgctttctttggcatgtccgcaaacgagttgcagaccaagaactaggtgatgccccattccttgatcggcttcgccgagatcagaagtccctaaagggaagaggcagcactctcggtctgaacatcgaaacagccacccgtgttggaaagcagatagtggagagaattctgaaggaagaatccgatgaggcacttaaaatgaccatggcctctgcacctgcttcgcgctacctaactgacatgactattgaggaaatgtcaagggactggttcatgctcatgcccaagcagaaagtggcaggccctctttgtatcagaatggaccaggcggtcatggataagagcatcatactgaaagcgaatttcagtgtgatttttgaccggctggagactctaatattactaagggctttcaccgaagagggagcaattgttggcgaaatttcaccattgccttctcttccaggacatactaatgaggatgtcaaaaatgcaattggagtcctcatcggaggacttgaatggaatgataacacagttcgagtctctaaaactctacagagattcgcttggagaagcagtaatgagaatgggggacctccactcactccaaaacagaaacggaaaatggcgagaacaattaggtcagaagttcgaagaaataagatggttgattgaagaagtgagacacagattgaaaataacagagaatagttttgagcaaataacatttatgcaagccttacagctattgtttgaagtggagcaagagataagaactttctcgtttcagcttatttaannnnnnnnnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/WSN/19337" spec="Sequence" taxon="A/WSN/1933" totalcount="4" value="agcaaaagcagggtgacaaagacataatggatccaaacactgtgtcaagctttcaggtagattgctttctttggcatgtccgcaaaagagttgcagaccaagaactaggtgatgccccattccttgatcggcttcgccgagatcagaagtccctaagaggaagaggcagcactcttggtctggacatcgaaacagccacccgtgctggaaagcaaatagtggagcggattctgaaggaagaatctgatgaggcactcaaaatgaccatggcctctgtacctgcatcgcgctacctaactgacatgactcttgaggaaatgtcaaggcactggttcatgctcatgcccaagcagaaagtggcaggccctctttgtatcagaatggaccaggcgatcatggataagaacatcatactgaaagcgaacttcagtgtgatttttgaccggctggagactctaatattactaagggccttcaccgaagaggggacaattgttggcgaaatttcaccactgccctctcttccaggacatactgatgaggatgtcaaaaatgcagttggggtcctcatcggaggacttgaatggaataataacacagttcgagtctctgaaactctacagagattcgcttggagaagcagtaatgagaatgggagacctccactcactccaaaacagaaacggaaaatggcgggaacaattaggtcagaagtttgaagaaataagatggttgattgaagaagtgagacacagactgaagataacagagaatagttttgagcaaataacatttatgcaagccttacaactattgcttgaagtggagcaagagataagaactttctcgtttcagcttatttaataataaaaaacacccttgtttctact"/> <sequence id="seq_A/Wilson-Smith/19337" spec="Sequence" taxon="A/Wilson-Smith/1933" totalcount="4" value="nnnnnnnnnnnnntgacaaagacataatggatccaaacactgtgtcaagctttcaggtagattgctttctttggcatgtccgcaaaagagttgcagaccaagaactaggtgatgccccattccttgatcggcttcgccgagatcagaagtccctaagaggaagaggcagcactctcggtctggacatcgaaacagccacccgtgctggaaagcaaatagtggagcggattctgaaggaagaatccgatgaggcacttaaaatgaccatggcctctgtacctgcatcgcgctacctaactgacatgactcttgaggaaatgtcaaggcactggttcatgctcatgcccaagcagaaagtggcaggccctctttgtatcagaatggaccaggcgatcatggataagaacatcatactgaaagcgaacttcagtgtgatttttgaccggctggagactctaatattactaagggccttcaccgaagagggaacaattgttggcgaaatttcaccactgccttctcttccaggacatactgatgaggatgtcaaaaatgcagttggggtcctcatcggaggacttgaatggaataataacacagttcgagtctctgaaactctacagagattcgcttggagaagcagtaatgagaatgggagacctccactcactccaaaacagaaacggaaaatggcgggaacaattaggtcagaagtttgaagaaataagatggttgattgaagaagtgagacacagactgaagataacagagaatagttttgagcaaataacatttatgcaagccttacaactattgcttgaagtggagcaagagataagaactttctcgtttcagcttatttaatgataaaaaannnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/Ohio/23/19357" spec="Sequence" taxon="A/swine/Ohio/23/1935" totalcount="4" value="nnnnnnnnnnnnnnnacaaagacataatggatttcaacactgtgtcaagctttcaggtagactgctttctttggcatgtccgcaaacggtttgcagacaataaattgggtgatgccccattccttgatcggctccgccgagatcaaaagtccctaataggaagaggcagcacccttggtctggacatcgagacagccacccgtgctggaaagcagatagtggagcggattctggaggaagaatccgacggggcacttaagatgaccattgcctctgtacctgcttcgcgttacctagctgacatgactcttgaggagatgtcaagggactggttcatgctcatgcccaagcaaaaggtggcaggctctctttgtataagaatggatcaggcgatcatggaaaagagcatcatactgaaagcgaacttcagtgtgattttcgaccggttggagactttaatactactaagggctttcaccgaagagggagcaattgttggcgaaatttcaccattgccttctcttccaggacatactgatgaggatgtcaaaaatgcagttggggtcctcatcggagggcttgaatggaatggtaacaaagttcgagtctctgaaaatctacagagattcgcttggagaagccgtaatgagaatgggagaccttcactacctccaaaacagaaatggaaaatggcgggaacaattaggtcagaaatttgaagaaataagatggttgattgaagaagtgagacacagactgaagataacagagaatagtttcgagcaaataacatttatgcaagccttacaactattgcttgaagtggagcaagagataagaactttctcgtttcagcttatttaataataannnnnnnnnnnnnnnnnnnn"/> <sequence id="seq_A/swine/USA/1976/19317" spec="Sequence" taxon="A/swine/USA/1976/1931" totalcount="4" value="nnnnnnnnnnnnnnnnnnnnnnnnnnatggattccaacactgtgtcaagctttcaggtagactgctttctttggcatgtccgcaaacggtttgcagacaaaaaattgggtgatgccccattccttgatcggctccgccgagatcaaaagtctctaagaggaagaggcagcacccttggtctggacatcgagacagccacccgtgctggaaagcagatagtggagcggattctggaggaagaatccaacggggcacttaaaatgaccattgcctctgtacctgcttcgcgttacctaactgacatgactcttgaggaaatgtcaagggactggttcatgctcatgcccaagcaaaaagtggcaggctctctttgtataagaatggaccaggcgatcatggaaaagagcatcatactgaaagcgaacttcagtgtgattttcgaccggttggagactttaatactactaagggctttcaccgaagagggagcaattgttggcgaaatttcaccattgccttctcttccaggatatactgatgaggatgtcaaaaatgcagttggggtcctcatcggagggcttgaatggaatggtaacacggttcgagtctctgaaaatctacagagattcgcttggagaagccgtaatgagaacgggagaccttcactacctccaaaacagaaatgggaagtggcgggaacaattaggtcagaagtttgaagaaataagatggttgattgaagaagtgagacacagactgaagataacagagaatagtttcgagcaaataacatttatgcaagccttgcaactattgcttgaagtggagcaagagataagaactttctcgtttcagcttatttaataataannnnnnnnnnnnnnnnnnnn"/> </data> <map name="Uniform" >beast.math.distributions.Uniform</map> <map name="Exponential" >beast.math.distributions.Exponential</map> <map name="LogNormal" >beast.math.distributions.LogNormalDistributionModel</map> <map name="Normal" >beast.math.distributions.Normal</map> <map name="Beta" >beast.math.distributions.Beta</map> <map name="Gamma" >beast.math.distributions.Gamma</map> <map name="LaplaceDistribution" >beast.math.distributions.LaplaceDistribution</map> <map name="prior" >beast.math.distributions.Prior</map> <map name="InverseGamma" >beast.math.distributions.InverseGamma</map> <map name="OneOnX" >beast.math.distributions.OneOnX</map> <run id="mcmc" spec="MCMC" chainLength="5000000"> <state id="state" spec="State" storeEvery="5000"> <tree id="Tree.t:alignedSegment1" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment1" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment1" spec="TaxonSet"> <alignment idref="alignedSegment1"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment1"/> </tree> <tree id="Tree.t:alignedSegment4" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment4" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment4" spec="TaxonSet"> <alignment idref="alignedSegment4"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment4"/> </tree> <parameter id="clockRate.c:alignedSegment4" spec="parameter.RealParameter" lower="0.001" name="stateNode" upper="0.0025">0.0014</parameter> <tree id="Tree.t:alignedSegment5" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment5" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment5" spec="TaxonSet"> <alignment idref="alignedSegment5"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment5"/> </tree> <parameter id="clockRate.c:alignedSegment5" spec="parameter.RealParameter" lower="0.001" name="stateNode" upper="0.0025">0.0014</parameter> <tree id="Tree.t:alignedSegment7" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment7" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment7" spec="TaxonSet"> <alignment idref="alignedSegment7"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment7"/> </tree> <parameter id="clockRate.c:alignedSegment7" spec="parameter.RealParameter" lower="0.001" name="stateNode" upper="0.0025">0.0014</parameter> <tree id="Tree.t:alignedSegment3" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment3" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment3" spec="TaxonSet"> <alignment idref="alignedSegment3"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment3"/> </tree> <parameter id="clockRate.c:alignedSegment3" spec="parameter.RealParameter" lower="0.001" name="stateNode" upper="0.0025">0.0014</parameter> <tree id="Tree.t:alignedSegment2" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment2" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment2" spec="TaxonSet"> <alignment idref="alignedSegment2"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment2"/> </tree> <parameter id="clockRate.c:alignedSegment2" spec="parameter.RealParameter" lower="0.001" name="stateNode" upper="0.0025">0.0014</parameter> <tree id="Tree.t:alignedSegment6" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment6" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment6" spec="TaxonSet"> <alignment idref="alignedSegment6"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment6"/> </tree> <parameter id="clockRate.c:alignedSegment6" spec="parameter.RealParameter" lower="0.001" name="stateNode" upper="0.0025">0.0014</parameter> <tree id="Tree.t:alignedSegment8" spec="beast.evolution.tree.Tree" name="stateNode"> <trait id="dateTrait.t:alignedSegment8" spec="beast.evolution.tree.TraitSet" traitname="date" value="A/Brevig_Mission/1/1918=1918,A/Hickox/1940=1940,A/Wilson-Smith/1933=1933,A/swine/USA/1976/1931=1931,A/swine/Ohio/23/1935=1935,A/WSN/1933=1933"> <taxa id="TaxonSet.alignedSegment8" spec="TaxonSet"> <alignment idref="alignedSegment8"/> </taxa> </trait> <taxonset idref="TaxonSet.alignedSegment8"/> </tree> <parameter id="clockRate.c:alignedSegment8" spec="parameter.RealParameter" lower="0.001" name="stateNode" upper="0.0025">0.0014</parameter> <parameter id="clockRate.c:alignedSegment1" spec="parameter.RealParameter" lower="0.0015" name="stateNode" upper="0.0015">0.0015</parameter> <parameter id="kappa.s:alignedSegment1" spec="parameter.RealParameter" lower="0.0" name="stateNode">2.0</parameter> <parameter id="popSizeCwR.alltrees" spec="parameter.RealParameter" name="stateNode">1.0</parameter> <stateNode id="networkCwR.alltrees" spec="coalre.simulator.SimulatedCoalescentNetwork" enableSegmentTreeUpdate="false" nSegments="8" traitSet="@dateTrait.t:alignedSegment1"> <parameter id="RealParameter.10" spec="parameter.RealParameter" name="reassortmentRate">0.0</parameter> <populationModel id="ConstantPopulation.0" spec="ConstantPopulation"> <parameter id="RealParameter.11" spec="parameter.RealParameter" name="popSize">1.0</parameter> </populationModel> <taxonSet id="TaxonSet.8" spec="TaxonSet" alignment="@alignedSegment1"/> </stateNode> <parameter id="freqParameter.s:alignedSegment1" spec="parameter.RealParameter" dimension="4" lower="0.0" name="stateNode" upper="1.0">0.25</parameter> </state> <init id="segmentTreeInitializerCwR.t:alignedSegment8" spec="coalre.network.SegmentTreeInitializer" network="@networkCwR.alltrees" segmentIndex="7"> 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segmentIndex="2"> <segmentTree idref="Tree.t:alignedSegment3"/> </init> <init id="segmentTreeInitializerCwR.t:alignedSegment2" spec="coalre.network.SegmentTreeInitializer" network="@networkCwR.alltrees" segmentIndex="1"> <segmentTree idref="Tree.t:alignedSegment2"/> </init> <init id="segmentTreeInitializerCwR.t:alignedSegment1" spec="coalre.network.SegmentTreeInitializer" network="@networkCwR.alltrees" segmentIndex="0"> <segmentTree idref="Tree.t:alignedSegment1"/> </init> <distribution id="posterior" spec="util.CompoundDistribution"> <distribution id="prior" spec="util.CompoundDistribution"> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment1" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment1"/> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment2" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment2"/> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment3" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment3"/> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment4" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment4"/> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment5" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment5"/> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment6" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment6"/> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment7" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment7"/> <distribution id="CoalescentWithReassortmentDummy.t:alignedSegment8" spec="coalre.util.DummyTreeDistribution" tree="@Tree.t:alignedSegment8"/> <distribution id="CoalescentWithReassortmentPrior.alltrees" spec="coalre.distribution.CoalescentWithReassortment"> <parameter id="reassortmentRateCwR.alltrees" spec="parameter.RealParameter" estimate="false" name="reassortmentRate">0.001</parameter> <populationModel id="constantPopSizeCwR.alltrees" spec="ConstantPopulation" popSize="@popSizeCwR.alltrees"/> <networkIntervals id="networkIntervalsCwR.alltrees" spec="coalre.distribution.NetworkIntervals" network="@networkCwR.alltrees"> <parameter id="binomialProbCwR.alltrees" spec="parameter.RealParameter" estimate="false" lower="0.0" name="binomialProb" upper="1.0">0.5</parameter> </networkIntervals> </distribution> <prior id="ClockPrior.c:alignedSegment1" name="distribution" x="@clockRate.c:alignedSegment1"> <Uniform id="Uniform.0" name="distr" upper="Infinity"/> </prior> <prior id="ClockPrior.c:alignedSegment2" name="distribution" x="@clockRate.c:alignedSegment2"> <Uniform id="Uniform.3" name="distr" upper="Infinity"/> </prior> <prior id="ClockPrior.c:alignedSegment3" name="distribution" x="@clockRate.c:alignedSegment3"> <Uniform id="Uniform.3.alignedSegment3" name="distr" upper="Infinity"/> </prior> <prior id="ClockPrior.c:alignedSegment4" name="distribution" x="@clockRate.c:alignedSegment4"> <Uniform id="Uniform.3.alignedSegment4" name="distr" upper="Infinity"/> </prior> <prior id="ClockPrior.c:alignedSegment5" name="distribution" x="@clockRate.c:alignedSegment5"> <Uniform id="Uniform.3.alignedSegment5" name="distr" upper="Infinity"/> </prior> <prior id="ClockPrior.c:alignedSegment6" name="distribution" x="@clockRate.c:alignedSegment6"> <Uniform id="Uniform.3.alignedSegment6" name="distr" upper="Infinity"/> </prior> <prior id="ClockPrior.c:alignedSegment7" name="distribution" x="@clockRate.c:alignedSegment7"> <Uniform id="Uniform.3.alignedSegment7" name="distr" upper="Infinity"/> </prior> <prior id="ClockPrior.c:alignedSegment8" name="distribution" x="@clockRate.c:alignedSegment8"> <Uniform id="Uniform.3.alignedSegment8" name="distr" upper="Infinity"/> </prior> <prior id="FrequenciesPrior.s:alignedSegment1" name="distribution" x="@freqParameter.s:alignedSegment1"> <Uniform id="Uniform.24" name="distr"/> </prior> <prior id="KappaPrior.s:alignedSegment1" name="distribution" x="@kappa.s:alignedSegment1"> <LogNormal id="LogNormalDistributionModel.0" name="distr"> <parameter id="RealParameter.8" spec="parameter.RealParameter" estimate="false" name="M">1.0</parameter> <parameter id="RealParameter.9" spec="parameter.RealParameter" estimate="false" name="S">1.25</parameter> </LogNormal> </prior> <prior id="popSizeCwRPrior.alltrees" name="distribution" x="@popSizeCwR.alltrees"> <OneOnX id="OneOnX.8" name="distr"/> </prior> </distribution> <distribution id="likelihood" spec="util.CompoundDistribution" useThreads="true"> <distribution id="treeLikelihood.alignedSegment1" spec="ThreadedTreeLikelihood" data="@alignedSegment1" tree="@Tree.t:alignedSegment1"> <siteModel id="SiteModel.s:alignedSegment1" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment1" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment1" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment1" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="hky.s:alignedSegment1" spec="HKY" kappa="@kappa.s:alignedSegment1"> <frequencies id="estimatedFreqs.s:alignedSegment1" spec="Frequencies" frequencies="@freqParameter.s:alignedSegment1"/> </substModel> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment1" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment1"/> </distribution> <distribution id="treeLikelihood.alignedSegment2" spec="ThreadedTreeLikelihood" data="@alignedSegment2" tree="@Tree.t:alignedSegment2"> <siteModel id="SiteModel.s:alignedSegment2" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment2" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment2" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment2" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="JC69.s:alignedSegment2" spec="JukesCantor"/> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment2" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment2"/> </distribution> <distribution id="treeLikelihood.alignedSegment3" spec="ThreadedTreeLikelihood" data="@alignedSegment3" tree="@Tree.t:alignedSegment3"> <siteModel id="SiteModel.s:alignedSegment3" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment3" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment3" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment3" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="JC69.s:alignedSegment3" spec="JukesCantor"/> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment3" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment3"/> </distribution> <distribution id="treeLikelihood.alignedSegment4" spec="ThreadedTreeLikelihood" data="@alignedSegment4" tree="@Tree.t:alignedSegment4"> <siteModel id="SiteModel.s:alignedSegment4" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment4" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment4" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment4" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="JC69.s:alignedSegment4" spec="JukesCantor"/> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment4" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment4"/> </distribution> <distribution id="treeLikelihood.alignedSegment5" spec="ThreadedTreeLikelihood" data="@alignedSegment5" tree="@Tree.t:alignedSegment5"> <siteModel id="SiteModel.s:alignedSegment5" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment5" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment5" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment5" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="JC69.s:alignedSegment5" spec="JukesCantor"/> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment5" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment5"/> </distribution> <distribution id="treeLikelihood.alignedSegment6" spec="ThreadedTreeLikelihood" data="@alignedSegment6" tree="@Tree.t:alignedSegment6"> <siteModel id="SiteModel.s:alignedSegment6" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment6" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment6" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment6" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="JC69.s:alignedSegment6" spec="JukesCantor"/> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment6" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment6"/> </distribution> <distribution id="treeLikelihood.alignedSegment7" spec="ThreadedTreeLikelihood" data="@alignedSegment7" tree="@Tree.t:alignedSegment7"> <siteModel id="SiteModel.s:alignedSegment7" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment7" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment7" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment7" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="JC69.s:alignedSegment7" spec="JukesCantor"/> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment7" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment7"/> </distribution> <distribution id="treeLikelihood.alignedSegment8" spec="ThreadedTreeLikelihood" data="@alignedSegment8" tree="@Tree.t:alignedSegment8"> <siteModel id="SiteModel.s:alignedSegment8" spec="SiteModel"> <parameter id="mutationRate.s:alignedSegment8" spec="parameter.RealParameter" estimate="false" name="mutationRate">1.0</parameter> <parameter id="gammaShape.s:alignedSegment8" spec="parameter.RealParameter" estimate="false" name="shape">1.0</parameter> <parameter id="proportionInvariant.s:alignedSegment8" spec="parameter.RealParameter" estimate="false" lower="0.0" name="proportionInvariant" upper="1.0">0.0</parameter> <substModel id="JC69.s:alignedSegment8" spec="JukesCantor"/> </siteModel> <branchRateModel id="StrictClock.c:alignedSegment8" spec="beast.evolution.branchratemodel.StrictClockModel" clock.rate="@clockRate.c:alignedSegment8"/> </distribution> </distribution> </distribution> <operator id="StrictClockRateScaler.c:alignedSegment4" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment4" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment4" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment4"/> </operator> <operator id="StrictClockRateScaler.c:alignedSegment5" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment5" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment5" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment5"/> </operator> <operator id="StrictClockRateScaler.c:alignedSegment7" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment7" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment7" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment7"/> </operator> <operator id="StrictClockRateScaler.c:alignedSegment3" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment3" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment3" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment3"/> </operator> <operator id="StrictClockRateScaler.c:alignedSegment2" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment2" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment2" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment2"/> </operator> <operator id="StrictClockRateScaler.c:alignedSegment6" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment6" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment6" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment6"/> </operator> <operator id="StrictClockRateScaler.c:alignedSegment8" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment8" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment8" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment8"/> </operator> <operator id="StrictClockRateScaler.c:alignedSegment1" spec="ScaleOperator" parameter="@clockRate.c:alignedSegment1" weight="3.0"/> <operator id="strictClockUpDownOperator.c:alignedSegment1" spec="UpDownOperator" scaleFactor="0.75" weight="3.0"> <up idref="clockRate.c:alignedSegment1"/> </operator> <operator id="KappaScaler.s:alignedSegment1" spec="ScaleOperator" parameter="@kappa.s:alignedSegment1" scaleFactor="0.5" weight="0.1"/> <operator id="popSizeCwRScale.alltrees" spec="ScaleOperator" parameter="@popSizeCwR.alltrees" scaleFactor="0.5" weight="1.0"/> <operator id="addRemoveReassortmentCwR.alltrees" spec="coalre.operators.AddRemoveReassortment" alpha="1.0" network="@networkCwR.alltrees" weight="30.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="divertSegmentCwR.alltrees" spec="coalre.operators.DivertSegmentOperator" network="@networkCwR.alltrees" weight="5.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="uniformNetworkCwR.alltrees" spec="coalre.operators.UniformNetworkNodeHeightOperator" network="@networkCwR.alltrees" weight="5.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="networkWideExchangeCwR.alltrees" spec="coalre.operators.NetworkExchange" isNarrow="false" network="@networkCwR.alltrees" weight="5.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="networkNarrowExchangeCwR.alltrees" spec="coalre.operators.NetworkExchange" network="@networkCwR.alltrees" weight="15.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="subNetworkSlideCwR.alltrees" spec="coalre.operators.SubNetworkSlide" network="@networkCwR.alltrees" weight="30.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="networkGibbsCwR.alltrees" spec="coalre.operators.GibbsOperatorAboveSegmentRoots" network="@networkCwR.alltrees" populationModel="@constantPopSizeCwR.alltrees" reassortmentRate="@reassortmentRateCwR.alltrees" weight="5.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="networkScaleCwR.alltrees" spec="coalre.operators.NetworkScaleOperator" network="@networkCwR.alltrees" weight="3.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="networkScaleRootCwR.alltrees" spec="coalre.operators.NetworkScaleOperator" network="@networkCwR.alltrees" scaleRootOnly="true" weight="3.0"> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="networkUpDownCwR.alltrees" spec="coalre.operators.NetworkScaleOperator" network="@networkCwR.alltrees" weight="3.0"> <upParameter idref="popSizeCwR.alltrees"/> <downParameter idref="clockRate.c:alignedSegment3"/> <downParameter idref="clockRate.c:alignedSegment4"/> <downParameter idref="clockRate.c:alignedSegment2"/> <downParameter idref="clockRate.c:alignedSegment7"/> <downParameter idref="clockRate.c:alignedSegment5"/> <downParameter idref="clockRate.c:alignedSegment8"/> <downParameter idref="clockRate.c:alignedSegment6"/> <downParameter idref="clockRate.c:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment1"/> <segmentTree idref="Tree.t:alignedSegment2"/> <segmentTree idref="Tree.t:alignedSegment3"/> <segmentTree idref="Tree.t:alignedSegment4"/> <segmentTree idref="Tree.t:alignedSegment5"/> <segmentTree idref="Tree.t:alignedSegment6"/> <segmentTree idref="Tree.t:alignedSegment7"/> <segmentTree idref="Tree.t:alignedSegment8"/> </operator> <operator id="FrequenciesExchanger.s:alignedSegment1" spec="DeltaExchangeOperator" delta="0.01" weight="0.1"> <parameter idref="freqParameter.s:alignedSegment1"/> </operator> <logger id="tracelog" spec="Logger" fileName="alignedSegment1.log" logEvery="1000" model="@posterior" sanitiseHeaders="true" sort="smart"> <log idref="posterior"/> <log idref="likelihood"/> <log idref="prior"/> <log idref="treeLikelihood.alignedSegment1"/> <log id="TreeHeight.t:alignedSegment1" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment1"/> <log idref="treeLikelihood.alignedSegment4"/> <log id="TreeHeight.t:alignedSegment4" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment4"/> <log idref="clockRate.c:alignedSegment4"/> <log idref="treeLikelihood.alignedSegment5"/> <log id="TreeHeight.t:alignedSegment5" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment5"/> <log idref="clockRate.c:alignedSegment5"/> <log idref="treeLikelihood.alignedSegment7"/> <log id="TreeHeight.t:alignedSegment7" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment7"/> <log idref="clockRate.c:alignedSegment7"/> <log idref="treeLikelihood.alignedSegment3"/> <log id="TreeHeight.t:alignedSegment3" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment3"/> <log idref="clockRate.c:alignedSegment3"/> <log idref="treeLikelihood.alignedSegment2"/> <log id="TreeHeight.t:alignedSegment2" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment2"/> <log idref="clockRate.c:alignedSegment2"/> <log idref="treeLikelihood.alignedSegment6"/> <log id="TreeHeight.t:alignedSegment6" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment6"/> <log idref="clockRate.c:alignedSegment6"/> <log idref="treeLikelihood.alignedSegment8"/> <log id="TreeHeight.t:alignedSegment8" spec="beast.evolution.tree.TreeHeightLogger" tree="@Tree.t:alignedSegment8"/> <log idref="clockRate.c:alignedSegment8"/> <log idref="clockRate.c:alignedSegment1"/> <log idref="kappa.s:alignedSegment1"/> <log idref="popSizeCwR.alltrees"/> <log id="networkCwRStatsLogger.alltrees" spec="coalre.statistics.NetworkStatsLogger" network="@networkCwR.alltrees"/> <log idref="freqParameter.s:alignedSegment1"/> </logger> <logger id="screenlog" spec="Logger" logEvery="1000"> <log idref="posterior"/> <log idref="likelihood"/> <log idref="prior"/> </logger> <logger id="treelog.t:alignedSegment1" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment1" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment1"/> </logger> <logger id="treelog.t:alignedSegment4" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment4" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment4"/> </logger> <logger id="treelog.t:alignedSegment5" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment5" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment5"/> </logger> <logger id="treelog.t:alignedSegment7" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment7" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment7"/> </logger> <logger id="treelog.t:alignedSegment3" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment3" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment3"/> </logger> <logger id="treelog.t:alignedSegment2" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment2" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment2"/> </logger> <logger id="treelog.t:alignedSegment6" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment6" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment6"/> </logger> <logger id="treelog.t:alignedSegment8" spec="Logger" fileName="$(tree).trees" logEvery="1000" mode="tree"> <log id="TreeWithMetaDataLogger.t:alignedSegment8" spec="beast.evolution.tree.TreeWithMetaDataLogger" tree="@Tree.t:alignedSegment8"/> </logger> <logger id="networkCwRLogger.alltrees" spec="Logger" fileName="$(filebase).network.trees" logEvery="10000" mode="tree"> <log idref="networkCwR.alltrees"/> </logger> <operatorschedule id="OperatorSchedule" spec="OperatorSchedule"/> </run> </beast>
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